Clarifying the influencing factors of energy consumption in underground production processes of coal mine is the premise and foundation for the coal mining industry to control the energy consumption and intensity to achieve the goal of carbon peak and carbon neutrality. This paper aims to investigate and compare the differences in energy consumption and carbon emissions between a mining-separating-backfilling integrated coal mine (MSBICM) and a traditional coal mine and explore the effects of the main production links underground on carbon emission intensity in coal mines. Hence, taking an MSBICM in Henan province as an example, this study constructed an energy consumption and carbon emission model of the mine using system dynamics (SD) method. Based on this model, the energy consumption of the main production logistics system and auxiliary production system in MSBICM was simulated and analyzed. In addition, this study made a comparative analysis of the energy consumption of the different production links in the two types of coal mines. The results showed that: (1) the comprehensive mechanized coal mining with solid filling system and ventilation system were the subsystems with the highest and lowest energy consumption in MSBICM respectively. (2) The influence rates of raw coal mining, gangue filling, coal-gangue separating, and material transportation on carbon emission intensity in coal mine were 1.09%, 1.34%, 1.09%, and 5.13%, respectively. (3) Under the same production and filling targets, energy consumption of underground transportation systems in MSBICM was found to be 336.66 tons of standard coal less than that in traditional coal mine. This study has helped clarify the complex relationships among the factors that influence energy consumption in coal mines and provided a reference for implementing dual control of energy consumption to promote lowcarbon mining of coal resources.