Much recent work has focused on characterising the mutualistic elements
of the plant microbiome, often aiming to identify bacterial strains that
can increase plant fitness. Although most work has focused on
terrestrial plants, Lemna minor, a floating aquatic angiosperm, is
increasingly used as a model in host-microbe interactions. Here we
assess the fitness and phenotypic consequences of the full microbiome
for L. minor by assaying plants from eight natural sites, with and
without their microbiomes, over a range of environmental conditions. We
find that the microbiome supresses plant fitness, for all genotypes and
across all environmental conditions. This decrease in fitness was
accompanied by phenotypic changes, with plants forming smaller colonies
and producing smaller fronds and shorter roots with the microbiome
present. Although the L. minor microbiome clearly includes important
symbionts, our findings suggest that we cannot discount the important
pathogenic, parasitic, and competitive interactions, whose influence can
override that of mutualists.