Key message
The nematode resistance gene
H2
was mapped to the distal end of chromosome 5 in tetraploid potato.
Abstract
The
H2
resistance gene, introduced into cultivated potatoes from the wild diploid species
Solanum multidissectum
, confers a high level of resistance to the Pa1 pathotype of the potato cyst nematode
Globodera pallida
. A cross between tetraploid
H2
-containing breeding clone P55/7 and susceptible potato variety Picasso yielded an F1 population that segregated approximately 1:1 for the resistance phenotype, which is consistent with a single dominant gene in a simplex configuration. Using genome reduction methodologies RenSeq and GenSeq, the segregating F1 population enabled the genetic characterisation of the resistance through a bulked segregant analysis. A diagnostic RenSeq analysis of the parents confirmed that the resistance in P55/7 cannot be explained by previously characterised resistance genes. Only the variety Picasso contained functionally characterised disease resistance genes
Rpi
-
R1
,
Rpi
-
R3a
,
Rpi
-
R3b
variant,
Gpa2
and
Rx
, which was independently confirmed through effector vacuum infiltration assays. RenSeq and GenSeq independently identified sequence polymorphisms linked to the
H2
resistance on the top end of potato chromosome 5. Allele-specific KASP markers further defined the locus containing the
H2
gene to a 4.7 Mb interval on the distal short arm of potato chromosome 5 and to positions that correspond to 1.4 MB and 6.1 MB in the potato reference genome.
Electronic supplementary material
The online version of this article (10.1007/s00122-019-03278-4) contains supplementary material, which is available to authorized users.