Conspectus
Cytochrome c oxidase (CcO) couples
the oxidation of cytochrome c to the reduction of
molecular oxygen to water and links these electron transfers to proton
translocation. The redox-driven CcO conserves part
of the released free energy generating a proton motive force that
leads to the synthesis of the main biological energy source ATP. Cytochrome ba
3 oxidase is a B-type oxidase from the extremely
thermophilic eubacterium Thermus thermophilus with
high O2 affinity, expressed under elevated temperatures
and limited oxygen supply and possessing discrete structural, ligand
binding, and electron transfer properties. The origin and the cause
of the peculiar, as compared to other CcOs, thermodynamic
and kinetic properties remain unknown. Fourier transform infrared
(FTIR) and time-resolved step-scan FTIR (TRS2-FTIR) spectroscopies
have been employed to investigate the origin of the binding and electron
transfer properties of cytochrome ba
3 oxidase
in both the fully reduced (FR) and mixed valence (MV) forms. Several
independent and not easily separated factors leading to increased
thermostability and high O2 affinity have been determined.
These include (i) the increased hydrophobicity of the active center,
(ii) the existence of a ligand input channel, (iii) the high affinity
of CuB for exogenous ligands, (iv) the optimized electron
transfer (ET) pathways, (v) the effective proton-input channel and
water-exit pathway as well the proton-loading/exit sites, (vi) the
specifically engineered protein structure, and (vii) the subtle thermodynamic
and kinetic regulation. We correlate the unique ligand binding and
electron transfer properties of cytochrome ba
3 oxidase with the existence of an adaption mechanism which
is necessary for efficient function. These results suggest that a
cascade of structural factors have been optimized by evolution, through
protein architecture, to ensure the conversion of cytochrome ba
3 oxidase into a high O2-affinity
enzyme that functions effectively in its extreme native environment.
The present results show that ba
3-cytochrome c oxidase uses a unique structural pattern of energy conversion
that has taken into account all the extreme environmental factors
that affect the function of the enzyme and is assembled in such a
way that its exclusive functions are secured. Based on the available
data of CcOs, we propose possible factors including the rigidity and
nonpolar hydrophobic interactions that contribute to the behavior
observed in cytochrome ba
3 oxidase.