IntroductionMitochondria are the organelles with the main responsibility for energy production in cells, generated in the form of ATP by oxidative phosphorylation (OXPHOS). Mitochondria are additionally involved in many other important processes, including apoptosis and calcium homeostasis (Pozzan et al., 2000;Newmeyer and Ferguson-Miller, 2003). Furthermore, mitochondria are the main site of the production of reactive oxygen species (ROS). The tricarboxylic acid (TCA) cycle, which in addition to its contribution to ATP production also generates several important metabolic intermediates, occurs in mitochondria (Boveris et al., 1972).Mitochondria contain their own genetic material, called mitochondrial DNA (mtDNA), a 16,569-bp-long, doublestranded, circular molecule containing just 37 genes. Only 13 of these genes encode proteins, all of them contributing to the formation of OXPHOS complexes through association with nuclear DNA (nDNA)-encoded proteins. The remaining genes encode 22 tRNAs and 2 rRNAs (Anderson et al., 1981). The copy number of mtDNA varies depending on the cell type and energy demand of the tissue.Replication of mtDNA is dependent on proteins encoded by nDNA and imported to mitochondria. Therefore, mtDNArelated diseases can be caused not only by mutations in mtDNA but also by defects in nDNA-encoded factors required for mtDNA replication (Figure 1). This dualdependence of mtDNA integrity is largely responsible for the heterogeneous nature of mtDNA-related diseases.The history of research on mtDNA-related diseases is relatively short, with the first disease-causing mtDNA mutations reported in 1988 (Holt et al., 1988;Wallace et al., 1988). These two ground-breaking studies paved the way to the discovery and characterization of a large number of mtDNA mutations, and at least 300 pathogenic mtDNA mutations have now been identified (www.mitomap.org). Due to the high degree of heterogeneity in mtDNA-related diseases, it is very hard to quantify their prevalence. Studies have been conducted to define the severity of mtDNA mutations in specific populations; however, a worldwide study in this field is missing. A study based in northeastern England reported that mtDNA-related diseases occurred at a frequency of 1 in 10,000 in working-age adults with a further 1 in 6000 people (below retirement age) at Abstract: Mitochondrial diseases are a heterogeneous group of disorders that are currently the focus of intense research. The many cell functions performed by mitochondria include ATP production, calcium homeostasis, and apoptosis. One of the unique properties of mitochondria is the existence of a separate mitochondrial genome (mitochondrial DNA, mtDNA) found in varying copy numbers and containing 37 genes, 13 of them encoding proteins. All 13 mitochondrially encoded proteins form part of oxidative phosphorylation complexes through combination with approximately 100 nuclear DNA-encoded proteins. Coregulation of nDNA and mtDNA is therefore essential for mitochondrial function, and this coregulation contributes t...