The phenotypic diversity resulting from the domestication of sheep has
made a significant contribution to human civilization. Hu sheep are a
local sheep breed unique to China. Here, we conducted whole-genome
sequencing of 207 Hu sheep and compared them with the wild ancestors of
domestic sheep (Asian mouflon) to investigate the sheep’s genetic
characteristics and selection signatures. Based on six signatures of
selection approaches, we detected genomic regions containing genes
related to reproduction (BMPR1B, BMP2, PGFS, CYP19, CAMK4, GGT5, and
GNAQ), vision (ALDH1A2, SAG, and PDE6B), nervous system (NAV1), and
immune response (GPR35, SH2B2, PIK3R3, and HRAS), which could
potentially be a target relevant to the domestication and selection of
Hu sheep. Association analysis revealed that missense mutations in the
GPR35 (GPR35 g.952651 A>G; GPR35 g.952496 C>T)
and NAV1 (NAV1 g.84216190 C>T; NAV1 g.84227412
G>A) genes were significantly associated (P <
0.05) with immune and growth traits in Hu sheep populations,
respectively. This research offers novel insights into Hu sheep
selection characteristics during domestication and facilitates further
genetic improvement and molecular investigations.