Essential oils are widely used as botanical insecticides rather than chemically synthesized pesticides which led to catastrophic effects on humans, the environment, and eutrophication. Here, encapsulation of four essential oils Basilicum ocimum, Cuminum cyminum, Origanum marjorana, and Matricaria chamomilla were utilized in the presence of 3% v/v ethanol, as anti-insect against Aphis craccivora and compared to traditional insecticides dinotefuran and pymetrozine. Different tools were used to characterize the prepared nanoemulsion such as TEM, SEM, and Zeta potential analyzer. Besides, selected B. ocimum and C. cyminum were analyzed by gas chromatography-mass GC/mass spectrometry. The results reveal that nanoemulsion exhibited considerable toxic activities against laboratory and field strains of cowpea aphid. In the toxicity bioassay test of essential oils, moderate mortality was observed at 10,000 mg/L against aphid with lethal concentration that kills 50% of insects (LC50) values of basil 992 mg/L and marjoram 3162 mg/L. Else, nanoemulsion provided the highest mortality rate at 625 mg/L and the LC50 values of basil nanoemulsion (NE) 45 mg/L, and marjoram NE 188 mg/L in laboratory strains. The systemic effects of the tested substances acetylcholine esterase, alkaline phosphatase, β-esterases, glutathione S-transferase (GST), and mixed-function oxidase (MFO) enzymes on insects were found to be significantly decreased and increased when compared with control groups. Overall, these results highlight that the nanoemulsion is potential tools to control cowpea aphid and could be useful in developing integrated insect management in faba bean fields.