Retina cognin (R-cognin) is a developmentally regulated 50-kDa protein that was isolated from chicken embryo retina cell membranes. It mediates the adhesion and reaggregation in vitro of retina cells from chicken and mouse embryos, but not of cells from other tissues, and may be involved in neuronal differentiation. We report here the cloning of a cDNA for R-cognin. A chicken embryo retina cDNA library was constructed in Agtll vector and was screened with polyclonal R-cognin antiserum, yielding several immunoreactive clones. Antiserum prepared to the R-cognin-galactosidase fusion protein produced by one recombinant lysogen recognized the 50-kDa R-cognin protein derived from retina cell membranes. This antiserum inhibited the reaggregation of dissociated retina cells and immunostalned chicken embryo retina tissue in a pattern similar to that obtained with R-cognin antiserum. In vit translation of RNA from a cDNA subclone yielded a 50-kDa protein that was recognized by R-cognin antiserum on a Western blot. By these criteria we identify the cDNA clone as representative of the gene encoding R-cognin.This cDNA is nearly identical to a major portion of the cDNA for the multifunctionail protein that is the ,B subunit of prolyl 4-hydroxylase and has both protein disulde isomerase activity and thyroid hormone-binding activity. These rmdings demonstrate that R-cognin differs from other cell adhesion molecules and suggest possible mechanisms for its action in cell adhesion and neuronal differentiation.Following the discovery of the retina celi recognition and adhesion molecule R-cognin (1-4), numerous cell adhesion molecules have been identified in the nervous system (5, 6) and implicated in cell aggregation, attachment, and migration and in neurite outgrowth and differentiation. R-cognin is a 50-kDa protein isolated from chicken embryo retina cell membranes (2). When R-cognin is added to suspensions of trypsin-dissociated embryonic retina cells, it binds to the cell surface (7), possibly to a 64-kDa protein (8), and enhances cell-cell aggregation. It has no similar effect on dissociated cells from other tissues (7). In the chicken embryo retina, R-cognin is initially expressed on the surface of virtually all the cells; as development progresses it becomes limited to the ganglion cell layer (9-11). In the mature retina, R-cognin is no longer detected on the cell surfaces (11).The role of R-cognin in cell recognition/adhesion and its suggested involvement in cell interactions and neuronal differentiation in the retina (1, 4, 9, 12) led us to investigate its molecular characteristics. We previously reported the construction and screening of a Agtll expression library with antiserum to R-cognin (13 from New England Nuclear. The bacterial strains E. coli Y1088 (r-, ml), Y1089 and Y1090 (r+, m+), and XL1-Blue (r-, m+) were obtained from Stratagene.Library Construction and Screening. RNA was isolated from chicken 8-day embryonic retinal tissue as described by Davis et al. (16), and poly(A)+ RNA was selected by oligo(dT)-...