The agglutinin-like sequence (Als) proteins are best-characterized in
Candida albicans
and known for their role in adhesion of the fungal cell to host and abiotic surfaces.
ALS
sequences are often misassembled in whole-genome sequence data because each species has multiple
ALS
loci that contain similar sequences, most notably tandem copies of highly conserved repeated sequences. The
Candida parapsilosis
species complex includes
Candida parapsilosis
,
Candida orthopsilosis
, and
Candida metapsilosis
, three distinct but closely related species. Using publicly available genome resources,
de novo
genome assemblies, and laboratory experimentation including Sanger sequencing, five
ALS
genes were characterized in
C. parapsilosis
strain CDC317, three in
C. orthopsilosis
strain 90–125, and four in
C. metapsilosis
strain ATCC 96143. The newly characterized
ALS
genes shared similar features with the well-known
C. albicans ALS
family, but also displayed unique attributes such as novel short, imperfect repeat sequences that were found in other genes encoding fungal cell-wall proteins. Evidence of recombination between
ALS
sequences and other genes was most obvious in
CmALS2265
, which had the 5′ end of an
ALS
gene and the repeated sequences and 3′ end from the
IFF/HYR
family. Together, these results blur the boundaries between the fungal cell-wall families that were defined in
C. albicans
. TaqMan assays were used to quantify relative expression for each
ALS
gene. Some measurements were complicated by the assay location within the
ALS
gene. Considerable variation was noted in relative gene expression for isolates of the same species. Overall, however, there was a trend toward higher relative gene expression in saturated cultures rather than younger cultures. This work provides a complete description of the
ALS
genes in the
C. parapsilosis
species complex and a toolkit that promotes further investigations into the role of the Als proteins in host-fungal interactions.