Campylobacter fetus cells possess multiple promoterless sap homologs, each capable of expressing a surface layer protein (SLP) by utilizing a unique promoter present on a 6.2-kb invertible element. Each sap homolog includes a 626-bp 5 conserved region (FCR) with 74 bp upstream and 552 bp within the open reading frame. After DNA inversion, the splice is seamless because the FCRs are identical. In mutant strain 23D:ACA2K101, in which sapA and sapA2 flanking the invertible element in opposite orientations were disrupted by promoterless chloramphenicol resistance (Cm r ) and kanamycin resistance (Km r ) cassettes, respectively, the frequency of DNA inversion is 100-fold lower than that of wild-type strain 23D. To define the roles of a 15-bp inverted repeat (IR) and a Chi-like site (CLS) in the FCR, we mutagenized each upstream of sapA2 in 23D:ACA2K101 by introducing NotI and KpnI sites to create strains 23D:ACA2K101N and 23D:ACA2K101K, respectively. Alternatively selecting colonies for Cm r or Km r showed that mutagenizing the IR or CLS had no apparent effect on the frequency of the DNA inversion. However, mapping the unique NotI or KpnI site in relation to the Cm r or Km r cassette in the cells that changed phenotype showed that splices occurred both upstream and downstream of the mutated sites. PCR and sequence analyses also showed that the splice could occur in the 425-bp portion of the FCR downstream of the cassettes. In total, these data indicate that C. fetus can use multiple sites within the FCR for its sap-related DNA inversion.Generation of antigenic variation is one of the mechanisms that pathogenic microorganisms have evolved to adapt to immunologically competent hosts. Such variation often reflects rearrangements of the genes encoding major antigens, which can occur by a wide variety of mechanisms (21,35,54). Such recombination may be site specific (21,29,35,54) or may involve repetitive (homologous) DNA sequences (55, 56). Most high-frequency DNA inversions involve site-specific recombination (1,21,29,35,36,71).Campylobacter fetus is a spiral gram-negative microaerophilic bacterial pathogen that interferes with reproductive function in ungulates and can cause extraintestinal infections in humans (28,32,46,59). C. fetus cells are covered by a paracrystalline surface array composed of specialized surface layer proteins (SLPs), ranging in size from approximately 97 to 149 kDa (14, 47). As shown by in vitro and in vivo studies, SLPs play a major role in C. fetus virulence (4,5,11,25,48,70). These SLPs are critical for resistance to innate host defenses by inhibiting C3b binding to the bacterial cell (6), and antigenic variation protects against antibody-mediated opsonization (28, 68).Each C. fetus cell possesses five to nine sapA homologs (19,20,26,64), clustered in a region of less than 93 kb, representing less than 8% of the bacterial chromosome (19,20). One part of the sap locus is a 6.2-kb invertible element containing the unique sapA promoter flanked by sapA homologs in opposite orientations. Variation...