This paper discusses the modeling activity of the NATO-STO Research Task Group AVT-349. The aim of this group is to improve the understanding and modeling of boundary layers in the complex flow around water vehicles. As such, the focus is on incompressible, high-Reynoldsnumber flows that can be subject to non-equilibrium conditions such as strong pressure gradients, three-dimensionality, and surface roughness and heterogeneity. The Task Group has identified a reduced number of simpler problems in which the above conditions can be studied separately and in controlled environments. These include two-dimensional rough-wall boundary layers