Salinity stress constrains the growth, development, and yield in crops. Rice is an important cereal crop highly affected by salinity. To ensure the agriculture production in salt-affected soils, it is enormously entail to understand the salt adaptation strategies of plants. Salinity directly affects the morphology, physiology, and metabolism of the plants. The current study was carried out to check the influence of different concentrations of sodium chloride on rice cultivar. Higher concentration of the NaCl showed significant reduction in the growth, pigment system, and metabolites in rice cultivars. Salinity also elicited the antioxidant enzymes (CAT, SOD, and POX) response and gene expression. Cell biological studies showed the H 2 O 2 production and nuclear fragmentation due to alleviated salinity stress. To delineate the portrayal of antioxidant proteins and autophagy mechanism in salinity stress, the homologs of rice CAT1, Mn-SOD, GPX, ATG1, and ATG6 genes were retrieved from blast search. The realtime PCR analysis showed differential expression of genes and depicts new molecular insight of target genes to understand the salinity stress and autophagy-mediated stress signaling pathways.