Special
AT
‐rich binding protein‐1 (
SATB
1) is a global chromatin organizer capable of activating or repressing gene transcription in mice and humans. The role of
SATB
1 is pivotal for T‐cell development, with
SATB
1‐knockout mice being neonatally lethal, although the exact mechanism is unknown. Moreover,
SATB
1 is dysregulated in T‐cell lymphoma and proposed to suppress transcription of the
Pdcd1
gene, encoding the immune checkpoint programmed cell death protein 1 (
PD
‐1). Thus,
SATB
1 expression in T‐cell subsets across different tissue compartments in humans is of potential importance for targeting
PD
‐1. Here, we comprehensively analyzed
SATB
1 expression across different human tissues and immune compartments by flow cytometry and correlated this with
PD
‐1 expression. We investigated
SATB
1 protein levels in pediatric and adult donors and assessed expression dynamics of this chromatin organizer across different immune cell subsets in human organs, as well as in antigen‐specific T cells directed against acute and chronic viral infections. Our data demonstrate that
SATB
1 expression in humans is the highest in T‐cell progenitors in the thymus, and then becomes downregulated in mature T cells in the periphery. Importantly,
SATB
1 expression in peripheral mature T cells is not static and follows fine‐tuned expression dynamics, which appear to be tissue‐ and antigen‐dependent. Furthermore,
SATB
1 expression negatively correlates with
PD
‐1 expression in virus‐specific
CD
8
+
T cells. Our study has implications for understanding the role of
SATB
1 in human health and disease and suggests an approach for modulating
PD
‐1 in T cells, highly relevant to human malignancies or chronic viral infections.