Water borne cercaria(ae) of the trematode genus Schistosoma rapidly penetrate host skin. A single serine protease activity, cercarial elastase, is deposited in advance of the invading parasite by holocytosis of vesicles from ten large acetabular gland cells. Cercarial elastase activity is a composite of multiple isoforms. Genes coding for the isoforms can be divided into two classes by amino acid and promoter sequence homology. Two of the five genes identified in Schistosoma mansoni account for over 90% of the activity and protein released. The remaining genes produce little protein or are silent. Positional scanning synthetic combinatorial substrate libraries demonstrate that the two major isoforms have similar substrate specificities and are, therefore, isoenzymes. The closely related Schistosoma hematobium and the distantly related Schistosomatium douthitti also contain multiple orthologous cercarial elastase genes suggesting that gene duplication may have occurred after speciation in Schistosoma evolution and that this duplication has been conserved.Cercaria(e), the aquatic infective larval stage of schistosomes, are highly adapted to rapidly penetrate the skin of the host upon contact. Enzymatic hydrolysis of host proteins is required for successful entry into the host vascular system (1). Two gland systems, the preacetabular and postacetabular glands, release proteases and comprise the majority of the volume of the cercarial head. Each gland cell releases proteases at the leading edge of the invading parasite through long, microtubule-lined cell processes or "ducts" that exit at the anterior head (2). The postacetabular glands are also responsible for depositing mucin, providing an adhesive surface on the skin for the parasite to initially attach. Considering the diverse set of macromolecular barriers the cercariae must breach during invasion, we previously investigated the possibility that multiple enzyme activities were required. However, only a single protease activity, cercarial elastase, was found to be present in acetabular gland secretions and required for invasion (3).Cercarial elastase is a trypsin family serine protease named because of its ability to cleave insoluble elastin, a major component of the dermis of skin (4, 5). Its P1 substrate specificity (1) is for large hydrophobic side chains, but in contrast to chymotrypsin (3) cercarial elastase is more active against macromolecular substrates than synthetic tetrapeptides.We examined the complement of genes coding for cercarial elastase in Schistosoma mansoni and found a family of isoforms that can be divided into two classes by amino acid and promoter sequence homology. This family of genes is also conserved in another schistosome species Schistosoma hematobium and Schistosomatium douthitti. The two most highly expressed S. mansoni isoforms comprise Ͼ90% of the released activity and are virtually identical in biochemical properties.