Aflatoxin contamination of peanut, due to infection by Aspergillus
flavus, is a major problem of rain-fed agriculture in India. In the
present study, molecular characterisation of 187 Aspergillus flavus
isolates, which were sampled from the peanut fields of Gujarat state in India, was
performed using AFLP markers. On a pooled cluster analysis, the markers could
successfully discriminate among the ‘A’, ‘B’ and ‘G’ group A. flavus
isolates. PCoA analysis also showed equivalent results to the cluster analysis. Most
of the isolates from one district could be clustered together, which indicated
genetic similarity among the isolates. Further, a lot of genetic variability was
observed within a district and within a group. The results of AMOVA test revealed
that the variance within a population (84%) was more than that between two
populations (16%). The isolates, when tested by indirect competitive ELISA, showed
about 68.5% of them to be atoxigenic. Composite analysis between the aflatoxin
production and AFLP data was found to be ineffective in separating the isolate types
by aflatoxigenicity. Certain unique fragments, with respect to individual isolates,
were also identified that may be used for development of SCAR marker to aid in rapid
and precise identification of isolates.