Reservoirs are artificial aquatic systems which show similar features to lakes and rivers, like the dynamic horizontal characteristics of rivers and the vertical ones of lakes. Due to these properties, there are many factors which are responsible for the distribution and composition of phytoplankton, as there are: stability of the water column, hydraulic retention time, dam operation, availability of nutrients, photosynthetically active solar radiation (PASR), and temperature. As a result of human actions during the past years, the reservoirs are undergoing a process of eutrophication, and therefore contributing to the growth of cyanobacteria, causing problems for wells and thus compromising the health of the population, as these organisms can produce highly aggressive toxins. The study of phytoplankton in the Itupararanga Reservoirs has so become more and more important, as it is a place for recreation, irrigation, public water supply for the counties Votorantim and Sorocaba, and the generation of electricity. The objective of this research is to study the temporal variability (in a seasonal or daily context) and spatial heterogeneity (horizontal axle and diferents deep) in the phytoplankton and to evaluate the potential toxic of predominant cyanobacteria species in this reservoir. In order to reach this aim, a sample collection took place at two sitesone near the dam and the other near the headwatersduring the rainy season (February 2011) and the dry season (July 2011), at a rhythm of every four hours during 10 consecutive days at different depths of the water column. The Phytoplankton community was characterized in relation to its structure (biomass and diversity) and its analysis of cyanotoxins (microcrystin, cylindospermopsin and saxitoxin), using the ELISA method. In order to relate the biological variables, hydrometeorological and abiotic variables have been analyzed. During the studied period, the Itupararanga Reservoir could be classified as polymictic, showing thermal stratification in the rainy season and circulation of the water column in the dry season. Variations in the phytoplankton structure could not be observed on a daily but only a seasonal basis. The average total phytoplankton density was 41,86x10 3 ind.mL-1 in the rainy season, and in the dry season 39,31x10 3 ind.mL-1. Two phytoplankton species altered in their dominance, in the rainy season the Chlorophyceae Monoraphidium contortum showed more presence, whereas in the dry season Cyanobacteria Cylindrospermopsis raciborskii was found in a higher quantity. There was a high relation between the total nutrients (NT:PT) and the dissolved ones (NID:PTD), in both periods, as well as no limitation in the nitrogen level. Microcrystin and cylindrospermposin could not be detected, and the concentrations of saxitoxin were below the limit set by the Brazilian Ministry of Health-MS n°2.914/2011 (3μg.L-1). However, it is essential to achieving a sustainable management plan for the catchment of Sorocaba and Middle Tiête, aimed at monitoring the occurrence...