The continuing challenges to the management of both wild and cultured eastern oyster Crassostrea virginica populations resulting from protozoan parasites has stimulated interest in the development of molecular assays for their detection and quantification. For Haplosporidium nelsoni, the causative agent of multinucleated sphere unknown (MSX) disease, diagnostic evaluations depend extensively on traditional but laborious histological approaches and more recently on rapid and sensitive (but not quantitative) end-point polymerase chain reaction (PCR) assays. Here, we describe the development and application of a quantitative PCR (qPCR) assay for H. nelsoni using an Applied Biosystems TaqMan ® assay designed with minor groove binder (MGB) probes. The assay was highly sensitive, detecting as few as 20 copies of cloned target DNA. Histologically evaluated parasite density was significantly correlated with the quantification cycle (C q ), regardless of whether quantification was categorical (r 2 = 0.696, p < 0.0001) or quantitative (r 2 = 0.797, p < 0.0001). Application in field studies conducted in North Carolina, USA (7 locations), revealed widespread occurrence of the parasite with moderate to high intensities noted in some locations. In Rhode Island, USA, application of the assay on oysters from 2 locations resulted in no positives.
KEY WORDS: MSX · Oysters · qPCR · Diagnostic assay · Histology · Parasite density
Resale or republication not permitted without written consent of the publisherDis Aquat Org 102: [107][108][109][110][111][112][113][114][115][116][117][118] 2012 history stages in atypical hosts, vectors, and/or environmental samples, and they provide a sensitive tool for detecting the pathogens at early stages of infection.Traditional PCR assays analyze end-point amplification products that generally require post-amplification handling for quantification, reducing their utility for some questions. These limitations have prompted interest in real-time or quantitative PCR (qPCR) assays, which have followed a trajectory similar to end-point PCR, from initial development as a diagnostic tool (Day et al. 2000, Yarnall et al. 2000, Audemard et al. 2004, Gauthier et al. 2006, Lyons et al. 2006, De Faveri et al. 2009) to application for understanding the ecology of the parasite in the environment, and mechanisms of host−pathogen interactions (Audemard et al. 2006, Marty et al. 2006, Gast et al. 2008, Liu et al. 2009). These applications have been made possible by the fact that qPCR assays permit the absolute or relative quantification of the target. For species of parasites that can be propagated in vitro, a qPCR assay can be calibrated using counts of cultured parasites (Yarnall et al. 2000, Audemard et al. 2004, Gauthier et al. 2006, De Faveri et al. 2009) to convert relative to absolute abundance. The inability to propagate some important bivalve pathogens complicates the development of qPCR assays for those pathogens. In such cases, calibration can be achieved by using semi-quantitative rating...