The island of Borneo has relatively low seismic activity. However, the plan to relocate the capital city to the East Borneo region could potentially increase the population, making the area more vulnerable to earthquake occurrences. Therefore, this research aims to determine the depth of the Mohorovičić discontinuity layer, which will provide insights into the thickness of the Earth's crust, and model the local P and S wave velocities using the Inversion, Migration, and Stacking H-k methods. The data used consists of earthquake events with magnitudes greater than 6, located within a distance of 30° to 90° from 6 BMKG stations around the new capital of Indonesia. The research results indicate that the depth of the Mohorovičić discontinuity layer varies between 28 and 43 km. The model of P-wave velocities varies between 1.8 km/s to 9.1 km/s, while the model of S-wave velocities ranges from 1.0 km/s to 5.1 km/s.