Seewis Virus: Phylogeography of a Shrew-Borne Hantavirus in Siberia, Russia

Yashina, L. N.; Abramov, S. K.; Гуторов, В. В.; Дупал, Т. А.; Krivopalov, A. V.; Panov, Victor V.; Данчинова, Г. А.; Виноградов, В. В.; Luchnikova, E. M.; Hay, John; Kang, Hae Ji; Yanagihara, Richard

doi:10.1089/vbz.2009.0154

Cited by 49 publications

(48 citation statements)

References 39 publications

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“…In this regard, phylogenetic segregation of TPMV sequences according to the geographic origin of the reservoir host species resembled that shown recently for Seewis virus in Sorex araneus 24,25 and MJNV in Crocidura lasiura . 16 These data were also consistent with the geographic-specific lineages shown previously for rodent-borne hantaviruses, including HTNV in Apodemus agrarius , 26 Soochong virus in Apodemus peninsulae , 27 Puumala virus in Myodes glareolus , 28,29 Muju virus in Myodes regulus , 30 and Tula virus in Microtus arvalis .…”

supporting

confidence: 77%

Genetic Diversity of Thottapalayam Virus, a Hantavirus Harbored by the Asian House Shrew (Suncus murinus) in Nepal

Kang¹,

Kosoy²,

Shrestha³

et al. 2011

The American Society of Tropical Medicine and Hygiene

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Abstract. Despite the recent discovery of genetically divergent hantaviruses in shrews of multiple species in widely separated geographic regions, data are unavailable about the genetic diversity and phylogeography of Thottapalayam virus (TPMV), a hantavirus originally isolated from an Asian house shrew ( Suncus murinus ) captured in southern India more than four decades ago. To bridge this knowledge gap, the S, M, and L segments of hantavirus RNA were amplified by reverse transcription polymerase chain reaction from archival lung tissues of Asian house shrews captured in Nepal from January to September 1996. Pair-wise alignment and comparison revealed approximately 80% nucleotide and > 94% amino acid sequence similarity to prototype TPMV. Phylogenetic analyses, generated by maximum likelihood and Bayesian methods, showed geographic-specific clustering of TPMV, similar to that observed for rodent-and soricid-borne hantaviruses. These findings confirm that the Asian house shrew is the natural reservoir of TPMV and suggest a longstanding virus-host relationship.

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supporting

confidence: 77%

Genetic Diversity of Thottapalayam Virus, a Hantavirus Harbored by the Asian House Shrew (Suncus murinus) in Nepal

Kang¹,

Kosoy²,

Shrestha³

et al. 2011

The American Society of Tropical Medicine and Hygiene

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“…Seewis virus (SWSV), originally detected in the Eurasian common shrew (Sorex araneus) in Switzerland (Song et al 2007), has now been found across the vast distribution of its soricine reservoir host in the Czech Republic (Schlegel et al 2012), Finland (Kang et al 2009a, Ling et al 2014, Germany (Schlegel et al 2012), Hungary (Kang et al 2009a), Poland , Russia (Yashina et al 2010), Slovakia (Schlegel et al 2012), and Slovenia Resman et al 2013).…”

Section: Introductionmentioning

confidence: 99%

Genetic Diversity of Artybash Virus in the Laxmann's Shrew (Sorex caecutiens)

Arai

Kang

et al. 2016

Vector-Borne and Zoonotic Diseases

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Although based on very limited M and L segment sequences, Artybash virus (ARTV) was proposed previously as a unique hantavirus harbored by the Laxmann's shrew (Sorex caecutiens). To verify this conjecture, lung tissues from 68 Laxmann's shrews, captured during 2006 to 2014 in eastern Siberia, Russia, and Hokkaido, Japan, were analyzed for ARTV RNA using reverse transcription polymerase chain reaction (RT-PCR). ARTV RNA was detected in six Laxmann's shrews. Pairwise alignment and comparison of partial-and full-length S, M, and L segment sequences from these Laxmann's shrews, as well as phylogenetic analyses, using maximum likelihood and Bayesian methods indicated that ARTV was distinct from other soricine shrew-borne hantaviruses and representative hantaviruses harbored by rodents, moles, and bats. Taxonomic identity of the ARTVinfected Laxmann's shrews was confirmed by full-length cytochrome b mitochondrial DNA sequence analysis. Our data indicate that the hantavirus previously known as Amga virus (MGAV) represents genetic variants of ARTV. Thus, the previously proposed designation of ARTV/MGAV should be replaced by ARTV.

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“…Однако интерпретация выявленных различий затруднена, поскольку в выборке есте-ственных хозяев хантавирусов -мышевидных грызунов -было всего 8 особей. Тем не менее, эти результаты свидетельствуют о том, что хантавирусы продолжают циркулировать среди мелких млекопи-тающих на территории Прибайкалья, где нами ранее подтверждено существование природных очагов [6,9,12]. Обнаружение антигена возбудителей ГЛПС в тканях байкальской нерпы может свидетельствовать о тесных контактах байкальских эндемиков с остров-ными или прибрежными млекопитающими и/или циркуляции в экосистеме оз.…”

Section: результаты и обсуждениеunclassified

“…В европейской части РФ тяжёлые фор-мы ГЛПС ассоциированы с вирусом Dobrava/Belgrad (DOBV) генотипа Sochi (носитель -кавказская лесная мышь), а для вирусов DOBV генотипа Kurkino (носи-тель -полевая мышь, европейский подтип) и Puumala (носитель -рыжая полёвка) характерно более лёгкое течение болезни [1,4,14]. Остальные хантавирусы, обнаруженные в РФ, либо не патогенны, либо их па-тогенность для человека не изучена [1,7,8,9,11,12].…”

unclassified

“…нами было установ-лено, что, несмотря на отсутствие официальной регистрации заболеваемости ГЛПС, в Прибайкалье циркулируют хантавирусы генотипов Hokkaido (HOKV) и Seewis (SWSV) [9,12,13]. Естественным хозяином HOKV является красно-серая полёвка, SWSV -близкородственные виды бурозубок.…”

unclassified

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