We demonstrate through isomeric effect the modulation of thermal properties of poly(hydroxystyrene) (PHS)-based block copolymers (BCPs). A minimal structural change of substituting 3HS for 4HS in the BCP results in a drastic decrease in T g , which in turn enables the thin film assembly of the BCP via thermal annealing. We synthesized a series of poly(3-hydroxystyrene-b-tert-butylstyrene) [P(3HS-b-tBuSt)] and poly(4-hydroxystyrene-b-tert-butylstyrene) [P(4HS-b-tBuSt)] BCPs by sequential anionic polymerization of protected 3HS/4HS monomer and tBuSt followed by deprotection. Measured T g of P(3HS) was ∼20−30°C lower than P(4HS) of comparable molecular weights. As a result, thermally driven self-assembly of P(3HS-b-tBuSt) BCPs in both bulk and thin film is demonstrated. For P(4HS-btBuSt) thermal annealing in thin-film at high temperatures results in poorly developed morphology due to cross-linking reaction of the 4HS block. The smallest periodicity observed for P(3HS-b-tBuSt) was 8.8 nm in lamellar and 11.5 nm in cylindrical morphologies. The functionality of the 3HS block was exploited to incorporate vapor phase metal oxide precursors to generate sub-10 nm alumina nanowires. D irecting microphase separation in block copolymer (BCP) thin films to yield highly ordered nanostructures has attracted scientific and technological interest due to its potential to enable rapid, low-cost large-area fabrication of nanoscale features. 1−7 A significant driver, for example, has been in the use of block copolymer lithography for producing bit-patterned media. 8 The minimum feature size (or domain size) is governed principally by the product of the degree of polymerization (N) and the effective interaction parameter (χ eff ) which is a measure of segregation strength between the polymer blocks, with microphase separation occurring for χ eff N > 10.5. 9 In principle, the self-assembly of BCPs can be controlled by adjusting these parameters, resulting in the fabrication of dense arrays of sub-50 nm nanostructures such as spheres, cylinders, and lamellae. 1,3 To achieve the single digit nanometer feature sizes desired for emerging applications, BCPs should be designed with 10 (i) thermodynamically incompatible blocks to yield a large χ eff for phase separation at lower degree of polymerization, 11−13 (ii) thermal properties such as glass transition temperatures suited for low cost industrial processing (e.g., thermal annealing), 14 (iii) large intrinsic etch selectivity between the blocks for pattern transfer, 15,16 or with functionalities that can provide etch contrast by enabling selective sequestration of etch-resistant materials, or precursors thereof, 17−19 and (iv) controlled molecular weights and narrow dispersity afforded through high-yielding polymerization method from readily accessible monomers.Poly(hydroxystyrene) (PHS)-based polymers are widely used resist materials and an easily accessible class of polymers. 20,21 It is a highly polar material relative to polystyrene, for example, as reflected in its high solubility pa...