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We consider an important class of self-assembly problems, and using the formalism of stochastic thermodynamics, we derive a set of design principles for growing controlled assemblies far from equilibrium. The design principles constrain the set of configurations that can be obtained under nonequilibrium conditions. Our central result provides intuition for how equilibrium self-assembly landscapes are modified under finite nonequilibrium drive.self-assembly | nonequilibrium self-assembly | pattern formation | stochastic thermodynamics | second law of thermodynamics T he fields of colloidal and nanoscale self-assembly have seen dramatic progress in the last few years. Indeed experimental and theoretical work has elucidated design principles for the assembly of complex 3D structures (1-4). Most of these advances, however, are based on an equilibrium thermodynamic framework: the target configuration minimizes a thermodynamic free energy (5). Understanding the principles governing self-assembly and organization in far-from equilibrium systems remains one of the central challenges of nonequilibrium statistical mechanics (6-13). In this report, we show that design principles can be derived for a broad class of nonequilibrium driven self-assembly processes. Our central result constrains the set of possible configurations that can be achieved under a nonequilibrium drive.Imagine a self-assembly process in which interactions among the various monomers are described by a set of energies E eq . The ratio of association and dissociation rates is set by a combination of interaction energies and chemical potentials {. . . µi . . .} of the monomers. This generic setup is sufficient to describe many selfassembly processes. Examples include growth of crystals from solution by nucleation (9), growth dynamics of cell walls (14), growth of multicomponent assemblies (4), and growth dynamics of biological polymers and filaments (15). The chemical potential controls the growth of the assembly. If the chemical potential is tuned to a coexistence value such that the assembly grows at an infinitesimally slow rate, then the configuration of the assembly can be predicted by computing the equilibrium partition function and free energy G eq appropriate to the set of interaction energies. For values of the chemical potentials more favorable than the coexistence chemical potential, the assembly grows at a nonzero rate. In such instances, the growing assembly might not have sufficient time to relax to values characteristic of the equilibrium partition function (9,16,17). Defects are accumulated as the assembly grows at a nonzero rate. The time taken for a defect to anneal increases rapidly with distance from the interface of the growing configuration. Due to the resulting kinetically trapped states, the crystal can assume configurations very different from those representative of the equilibrium state (9,16,17).By applying the second law of thermodynamics and the formalism of stochastic thermodynamics, we derive a surprising thermodynamic relati...
We consider an important class of self-assembly problems, and using the formalism of stochastic thermodynamics, we derive a set of design principles for growing controlled assemblies far from equilibrium. The design principles constrain the set of configurations that can be obtained under nonequilibrium conditions. Our central result provides intuition for how equilibrium self-assembly landscapes are modified under finite nonequilibrium drive.self-assembly | nonequilibrium self-assembly | pattern formation | stochastic thermodynamics | second law of thermodynamics T he fields of colloidal and nanoscale self-assembly have seen dramatic progress in the last few years. Indeed experimental and theoretical work has elucidated design principles for the assembly of complex 3D structures (1-4). Most of these advances, however, are based on an equilibrium thermodynamic framework: the target configuration minimizes a thermodynamic free energy (5). Understanding the principles governing self-assembly and organization in far-from equilibrium systems remains one of the central challenges of nonequilibrium statistical mechanics (6-13). In this report, we show that design principles can be derived for a broad class of nonequilibrium driven self-assembly processes. Our central result constrains the set of possible configurations that can be achieved under a nonequilibrium drive.Imagine a self-assembly process in which interactions among the various monomers are described by a set of energies E eq . The ratio of association and dissociation rates is set by a combination of interaction energies and chemical potentials {. . . µi . . .} of the monomers. This generic setup is sufficient to describe many selfassembly processes. Examples include growth of crystals from solution by nucleation (9), growth dynamics of cell walls (14), growth of multicomponent assemblies (4), and growth dynamics of biological polymers and filaments (15). The chemical potential controls the growth of the assembly. If the chemical potential is tuned to a coexistence value such that the assembly grows at an infinitesimally slow rate, then the configuration of the assembly can be predicted by computing the equilibrium partition function and free energy G eq appropriate to the set of interaction energies. For values of the chemical potentials more favorable than the coexistence chemical potential, the assembly grows at a nonzero rate. In such instances, the growing assembly might not have sufficient time to relax to values characteristic of the equilibrium partition function (9,16,17). Defects are accumulated as the assembly grows at a nonzero rate. The time taken for a defect to anneal increases rapidly with distance from the interface of the growing configuration. Due to the resulting kinetically trapped states, the crystal can assume configurations very different from those representative of the equilibrium state (9,16,17).By applying the second law of thermodynamics and the formalism of stochastic thermodynamics, we derive a surprising thermodynamic relati...
In this article we provide a review of geometrical methods employed in the analysis of quantum phase transitions and non-equilibrium dissipative phase transitions. After a pedagogical introduction to geometric phases and geometric information in the characterisation of quantum phase transitions, we describe recent developments of geometrical approaches based on mixed-state generalisation of the Berry-phase, i.e. the Uhlmann geometric phase, for the investigation of non-equilibrium steady-state quantum phase transitions (NESS-QPTs). Equilibrium phase transitions fall invariably into two markedly non-overlapping categories: classical phase transitions and quantum phase transitions, whereas in NESS-QPTs this distinction may fade off. The approach described in this review, among other things, can quantitatively assess the quantum character of such critical phenomena. This framework is applied to a paradigmatic class of lattice Fermion systems with local reservoirs, characterised by Gaussian non-equilibrium steady states. The relations between the behaviour of the geometric phase curvature, the divergence of the correlation length, the character of the criticality and the gap-either Hamiltonian or dissipative-are reviewed.
When chemically fueled, molecular self-assembly can sustain dynamic aggregates of polymeric fibershydrogelswith tunable properties. If the fuel supply is finite, the hydrogel is transient, as competing reactions switch molecular subunits between active and inactive states, drive fiber growth and collapse, and dissipate energy. Because the process is away from equilibrium, the structure and mechanical properties can reflect the history of preparation. As a result, the formation of these active materials is not readily susceptible to a statistical treatment in which the configuration and properties of the molecular building blocks specify the resulting material structure. Here, we illustrate a stochastic–thermodynamic and information–theoretic framework for this purpose and apply it to these self-annihilating materials. Among the possible paths, the framework variationally identifies those that are typicalloosely, the minimum number with the majority of the probability. We derive these paths from computer simulations of experimentally-informed stochastic chemical kinetics and a physical kinetics model for the growth of an active hydrogel. The model reproduces features observed by confocal microscopy, including the fiber length, lifetime, and abundance as well as the observation of fast fiber growth and stochastic fiber collapse. The typical mesoscopic paths we extract are less than 0.23% of those possible, but they accurately reproduce material properties such as mean fiber length.
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