Sequencing and characterisation of complete mitogenome DNA for Rasbora sarawakensis (Cypriniformes: Cyprinidae: Rasbora) with phylogenetic consideration

The Malaysian mahseer (Tor tambroides) is a sport, ornamental and food all-in-one treasured aquaculture fish member of the Cyprinidae family. However, this freshwater riverine species is currently under the threats of habitat degradation and overfishing, apart from its poorly documented taxonomy. Despite its socio-economic significance, taxonomy confusion and conservation inadequacy, the knowledge gaps in some fields like the genomic landscape and biology are yet to be filled. In this comprehensive review, we presented an overview of all the past and current T. tambroides related research fields, namely morphology, population genetics, growth environment, reproduction, diet and nutrition, metagenome, mitogenome as well as conservation. Furthermore, we have included some future perspectives and recommendations for the advancement of the respective fields. It is anticipated that this review would be of great benefit to those planning to consolidate resources and work in tandem to pace the conservation and fish farming industry improvement endeavours.

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A Review on the Emerging Asian Aquaculture Fish, the Malaysian Mahseer (Tor tambroides): Current Status and the Way Forward

Lau

Lim

Ishak

et al. 2021

Proc Zool Soc

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Genome-Wide Identification, Characterisation and Phylogenetic Analysis of 52 Striped Catfish (Pangasianodon hypophthalmus) ATP-Binding Cassette (ABC) Transporter Genes

Lim¹,

Chung²,

Gan³

2022

TLSR

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The Pangasianodon hypophthalmus (striped or tra catfish) is a Pangasiidae family member famous for its high unsaturated fatty acid content flesh. This riverine catfish can breathe in the air unlike the channel catfish. One of the most well-known ecotoxicological protein superfamily, the ATP-binding cassette (ABC) transporters, has been characterised in channel catfish through a genome-wide approach. Therefore, it is interesting to unearth these proteins within the striped catfish genome for a comprehensive comparison across all catfishes available. A total of 52 ABC transporters were discovered from the striped catfish genome. The motif analysis has unconcealed various unshared characteristics of some catfishes. The phylogenetic analysis has evidenced its effectiveness in the successful annotations of these transporter proteins. Duplicated genes such as ABCA1, ABCB3, ABCB6, ABCC5, ABCD3, ABCE1, ABCF2 as well as ABCG2 were uncovered within the striped and channel catfish genomes. This entire set of ABC transporters yields precious genomic data for future ecotoxicological, biochemical and physiological research in striped catfish.

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Sequencing and characterisation of complete mitogenome DNA for Rasbora sarawakensis (Cypriniformes: Cyprinidae: Rasbora) with phylogenetic consideration

Cited by 2 publications

References 26 publications

A Review on the Emerging Asian Aquaculture Fish, the Malaysian Mahseer (Tor tambroides): Current Status and the Way Forward

A Review on the Emerging Asian Aquaculture Fish, the Malaysian Mahseer (Tor tambroides): Current Status and the Way Forward

Genome-Wide Identification, Characterisation and Phylogenetic Analysis of 52 Striped Catfish (Pangasianodon hypophthalmus) ATP-Binding Cassette (ABC) Transporter Genes

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