Tick-borne pathogens (TBPs) seriously affect cattle production and can be economically damaging. The epidemiology of these organisms in the Chongqing municipality of China is not well described. This study aimed to investigate the prevalence and risk factors of TBPs including
Anaplasma
spp.,
Babesia
spp. and
Theileria
spp. in cattle in Chongqing municipality. The results showed that 43.48% (150/345) of cattle were infected with at least one TBP, of which single infections were detected in 104 (30.14%), double infections in 34 cattle (9.86%) and triple infections in 12 (3.48%) of the cattle. The overall prevalence of
Anaplasma
spp.,
Theileria
spp. and
B
.
bigemina
were 22.32%, 23.19% and 7.24%, respectively. Among these, the prevalence of
A
.
bovis
,
A
.
central
,
A
.
phagocytophilum
,
A
.
platys
,
A
.
marginale
,
T
.
sinensisi
and
T
.
orientalis
were 8.41%, 7.83%, 4.93%, 4.35%, 2.61%, 22.32% and 2.60%, respectively. We could not detect
B
.
bovis
,
T
.
annulata
,
T
.
luwenshuni
or
T
.
uilenbergi
in cattle. Cattle ≥1-year-old were more likely to be infected with
Theileria
spp. [adjusted odd ratio (AOR) = 2.70, 95% CI = 1.12–6.56)] compared with younger cattle, while cattle ≥1-year-old had reduced susceptibility to
B
.
bigemina
(AOR = 0.14, 95% CI = 0.03–0.60). Cattle living at higher altitude (≥500 m) were more susceptible to
B
.
bigemina
(AOR = 6.97, 95% CI = 2.08–23.35) and
Theileria
spp. infection (AOR = 1.87, 95% CI = 1.06–3.32). The prevalence of
Theileria
spp. on farms with cats was significantly higher than that without cats (AOR = 2.56, 95% CI = 1.12–5.88). Infection with
A
.
bovis
and
A
.
central
were significantly associated with
A
.
phagocytophilum
infection. Furthermore, there were significant associations between
A
.
bovis
and
A
.
central
infection,
T
.
sinensisi
and
A
.
marginale
infection, and
B
.
bigemina
and
...