Deep learning classification is commonly used to assess biomedical data. Fetal heart rate (FHR) signal data monitor the health of both the mother and the fetus and prevent mobility and death in fetuses at risk of hypoxia. But, the data imbalance is a major problem and happens frequently. To overcome this problem, a Deep Siamese domain adaptation convolutional Neural Network optimized with Honey Badger Algorithm (HBA) is proposed in this paper for Fetal Arrhythmia Detection and Classification from ECG signals (DSDACNN-HBA-FAC). The input ECG signals are collected from the fetal ECG dataset. Then, the ECG data are pre-processed using coherence shock filtering (CSF), which eliminates artifacts, like baseline drift, contact noise, muscle artifacts, electrode motion, electromyography artifacts. Using the improved non-subs sampled Shearlet transform (INSST) method, the pre-processed ECG data recover the mean, standard deviation, root mean square, skewness, kurtosis, zero-crossing, autoregressive coefficients, estimated entropy, and Higuchi’s fractal dimension. The DSDACNN classifier utilizes the features extracted to categorize the output as normal and arrhythmia. In general, DSDACNN does not agree on any optimization techniques to define the optimum parameters and to ensure accurate classification. Therefore, HBA is employed to optimize the DSDACNN weight parameters. The proposed method is implemented in MATLAB. The performance metrics, like sensitivity, precision, recall, f-measure, specificity, accuracy, computation time, RoC, and error rate are evaluated. The performance of DSDACNN-HBA-FAC achieves 3.101%, 7.12%, 7.73% high accuracy, 51.136%, 59.04%, 44.51% lower computation Time and 2.292%, 5.365%, 1.551% greater AUC compared with the existing techniques, like Fetal Arrhythmia Detection with Classification from ECG Signals: A NonInvasive Method (ANN-FAC), Semi-supervised active transfer learning for fetal ECG arrhythmia identification (DNN-FAC), fetal arrhythmia detection using adaptive single channel electrocardiogram extraction (CNN-FAC), respectively.