The Pari Island Cluster, located on the Southside of the Seribu Archipelago, is bordered by Jakarta and Tangerang Regency is covered Pari, Kudus, and Tikus Islands. The Pari Island cluster has potential ecosystems, such as coral reefs, seagrass, and mangrove. The presentation of this article is an overview of the results of research conducted by the Research Institute for Marine Fisheries and the Research Institute for Fisheries Enhancement, The Agency for Marine and Fisheries Research and Human Resources. This study aims to present and describe habitat and reef fish populations. The assessment result shows that the criteria for the coral reefs’ health were poor to good, mostly moderate, the best in the southeast and northeast waters, which had been designated MPAs. Reef fish population density on the criteria was very rare or low at all observation sites. The dominant group was Caesio cuning, Cephalopholis boenak, Scarus ghobban (target group), and Chaetodon octofasciatus (indicator group). The implementation hopes Pari Island Cluster waters would expand to be designated MPAs due to the large number of care areas used for fishing territories.