Selective separation of intact phosphoproteins from complex biological samples is essential for the ongoing top-down phosphoproteomics, but challenges still remain. Herein, aluminium hydroxide functionalized silica nanoparticles (denoted as AGNP) was synthesized by a facile approach and applied for specific capture of phosphoproteins. The selectivity and binding capacity of AGNP were evaluated by using caseins (α-casein and β-casein) as phosphoproteins and nonphosphoproteins (bovine haemoglobin, bovine serum albumin, horseradish peroxidase, myoglobin and lysozyme) as nonphoproteins. The results indicated that the AGNP showed high bind-ing capacity and selectivity for phosphpproteins (αcasein 1190 mg g -1 and β-casein 1060 mg g -1 ). In addi-tion, the AGNP can be used to selectively capture and enrich phosphpproteins from protein mixture and drinking milk samples. The good results demonstrate the potential of the AGNP in phosphoproteomics analysis.Aluminium hydroxide functionalized silica nanoparticles was synthesized by a facile approach and successfully applied for specific capture of phosphoproteins from complex sample.