This article is devoted to the study of the reasons for the decline in the quality of root crops during post-harvest storage in piles under the influence of harmful microflora. The subject of the research is the process of sugar beet storage in enterprises. The causes of sugar beet mass losses are analyzed. Mathematical models have been developed for the intensity of damage to root crops by the most common types of clamp rot. A description of an automated information system designed to maintain the normative parameters of the microclimate inside the piles by means of information technologies is given.