2022
DOI: 10.1016/j.xgen.2021.100083
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Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

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Cited by 16 publications
(19 citation statements)
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References 117 publications
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“…The DCC and the functional annotation track hub will thus serve as a foundation for future single-cell studies of transcriptomes 66 68 , open chromatin 30 and others, as demonstrated with single-cell ATAC-seq data here. The functional annotations presented will also aid in targeted manipulation of genomic elements.…”
Section: Discussionmentioning
confidence: 87%
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“…The DCC and the functional annotation track hub will thus serve as a foundation for future single-cell studies of transcriptomes 66 68 , open chromatin 30 and others, as demonstrated with single-cell ATAC-seq data here. The functional annotations presented will also aid in targeted manipulation of genomic elements.…”
Section: Discussionmentioning
confidence: 87%
“…The tracks further include annotation of approximately 140,000 predicted ATAC-seq-supported developmental regulatory elements (PADRE) annotated by ChromHMM categories. The bulk sample-based predictions for regulatory elements are complemented with annotations of cell-type specificity of candidate regulatory elements provided by single-cell ATAC-seq 30 (Supplementary Videos 3 – 5 ).…”
Section: Resultsmentioning
confidence: 99%
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“…Recent work in zebrafish has applied this technology to hematopoietic stem and progenitor cells (HSPCs) ( Avagyan et al, 2021 ). Works from McGarvey et al (2022) investigated changes in chromatin modification on a single cell level between the cloche mutant and wild-type cells. cloche mutants carry a mutation in the transcription factor Npas4l ( Reischauer et al, 2016 ) and display a complete absence of vasculature, blood cells, and endocardium ( Stainier et al, 1995 ).…”
Section: Defining the Chromatin State Of Endothelial Cellsmentioning
confidence: 99%