2023
DOI: 10.1111/tpj.16487
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Single‐cell transcriptomic analysis of pea shoot development and cell‐type‐specific responses to boron deficiency

Xi Chen,
Yanqi Ru,
Hirokazu Takahashi
et al.

Abstract: SUMMARYUnderstanding how nutrient stress impacts plant growth is fundamentally important to the development of approaches to improve crop production under nutrient limitation. Here we applied single‐cell RNA sequencing to shoot apices of Pisum sativum grown under boron (B) deficiency. We identified up to 15 cell clusters based on the clustering of gene expression profiles and verified cell identity with cell‐type‐specific marker gene expression. Different cell types responded differently to B deficiency. Speci… Show more

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Cited by 12 publications
(5 citation statements)
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“…The expression of these genes was suppressed, suggesting a reorganization of chromatin during SAM development and a possibly impaired SAM activity under B deficiency. These results emphasize the importance of considering cell type-specific stress responses, which may be key to unraveling complex biological processes [147].…”
Section: Taking Advantage Of Single-cell Transcriptomics To Understan...mentioning
confidence: 72%
See 1 more Smart Citation
“…The expression of these genes was suppressed, suggesting a reorganization of chromatin during SAM development and a possibly impaired SAM activity under B deficiency. These results emphasize the importance of considering cell type-specific stress responses, which may be key to unraveling complex biological processes [147].…”
Section: Taking Advantage Of Single-cell Transcriptomics To Understan...mentioning
confidence: 72%
“…Sc/snRNAseq offers the possibility to study division and differentiation at cell resolution, quantifying the contribution of individual cells during the formation of new aerial structures, a task that was impossible before this technology [15]. Currently, three SAM scRNA-seq studies in Arabidopsis [145], one in maize [146], and one in pea [147], and two SAM snRNA-seq studies, one in tomato [148] and one in Populus [149], are available (Table 1). The transcriptomic landscape of the Arabidopsis SAM is an invaluable reference due to its status as the most extensively studied plant model species and has led to numerous resources for single-cell analysis.…”
Section: Taking Advantage Of Single-cell Transcriptomics To Understan...mentioning
confidence: 99%
“…The arrest of meristematic activity occurs already within the first hour after B deprivation, as cells become unable to divide and elongate properly (Poza‐Viejo et al ., 2018). In shoots, growth and development are negatively affected by a range of processes, including downregulation of photosynthetic genes in the developing mesophyll cells and genes related to stomatal development and density (Chen et al ., 2023a). Boron deficiency also suppresses the expression of genes encoding histones and chromatin assembly and remodelling proteins, which further impairs the shoot apical meristem activity (Chen et al ., 2023a).…”
Section: Boronmentioning
confidence: 99%
“…In shoots, growth and development are negatively affected by a range of processes, including downregulation of photosynthetic genes in the developing mesophyll cells and genes related to stomatal development and density (Chen et al ., 2023a). Boron deficiency also suppresses the expression of genes encoding histones and chromatin assembly and remodelling proteins, which further impairs the shoot apical meristem activity (Chen et al ., 2023a). In roots, the disorganization of the meristem results in a stubby, swollen appearance, frequently with increased root hair formation (Fig.…”
Section: Boronmentioning
confidence: 99%
“…As a classic model plant and the second most important grain legume, pea ( Pisum sativum L., 2n = 14) has been widely used in genetics and developmental biology studies since Mendel ( Kreplak et al., 2019 ; Chen et al., 2022 ; Chen et al., 2023 ; Li et al., 2023 ). Pea has become an important legume crop and green vegetable favored by many people worldwide.…”
Section: Introductionmentioning
confidence: 99%