Previous studies identified advanced glycation end products (AGEs) accumulation in the intervertebral disc (IVD) as an essential risk factor associated with IVD degeneration via accelerated cell apoptosis and impeded extracellular‐matrix metabolism; however, the underlying mechanisms have not been fully elucidated. Here, we investigated the effects and mechanisms of AGEs‐mediated apoptosis in vitro and in vivo. We evaluated the effects of AGEs on endoplasmic reticulum (ER) stress, apoptosis, and subcellular calcium (Ca2+) redistribution. Our data indicated time‐ and concentration‐dependent upregulation of ER‐stress responses in AGEs‐treated nucleus pulposus (NP) cells. Additionally, we observed marked suppression of AGEs‐mediated apoptosis following the inhibition of ER stress using 4‐phenylbutyric acid. Moreover, AGEs‐induced sustained cytosolic Ca2+ ([Ca2+]c) elevation and ER luminal Ca2+ ([Ca2+]er) depletion in a concentration‐ and time‐dependent manner in NP cells. Furthermore, we observed significant increases and decreases in levels of the ER‐resident Ca2+‐release channels inositol 1,4,5‐triphosphate receptor and ryanodine receptor and ER Ca2+‐reuptake pumps sarco/endoplasmic reticulum Ca2+‐ATPase, respectively. Pharmacologically blocking ER Ca2+ release using Ca2+ antagonists significantly ameliorated Ca2+ dyshomeostasis, ER stress, and subsequent apoptosis in NP cells and partially attenuated the progression of IVD degeneration in vivo. These results demonstrated that impaired Ca2+ homeostasis plays an essential role in AGEs‐mediated ER stress and subsequent apoptosis in NP cells, with blockage of ER Ca2+ release partially ameliorating subcellular Ca2+ redistribution, ER stress, and apoptosis. Our findings provide novel mechanistic insight into the role of AGEs in the pathogenesis of IVD degeneration and a potential therapeutic strategy.