The pattern of integration of spleen necrosis virus (SNV) DNA in DNA from a large population of SNV-infected chicken cells was studied by nucleic acid hybridization with iodinated viral RNA by the blotting technique of Southern. SNV DNA was found to be integrated at multiple sites in acutely infected chicken cells. Concomitant with the transition from acute to chronic infection, a shift in the pattern of integration was observed. The majority of integrated SNV DNA found in acutely infected cells was absent from chronically infected cells. This result is consistent with the hypothesis that the cell death that occurs after infection of avian cells with reticuloendotheliosis viruses is a consequence of the multiple integrations of the provirus. Viral DNA was also integrated at multiple sites in chronically infected cells. However, infectious viral DNA molecules in chronically infected cells migrated in a uniform manner in agarose gel electrophoresis after EcoRI digestion (which does not cut viral DNA), indicating that not all integrated SNV copies are equally infectious. Retrovirus DNA is stably integrated in host cell DNA (1, 2). However, little is known about the sites of integration and the mechanism by which viral DNA integrates into host cell DNA. Early after retrovirus infection of sensitive cells, many complete viral DNA molecules are synthesized and some are also found in the nucleus. Only a portion of these molecules become stably integrated in the host genome (2-5). The reason for the restricted number of integrated viral DNA molecules is unknown. A limited number of sites in host cell DNA that can integrate viral DNA molecules has been suggested (3).Previous studies from our laboratory have shown that infectious reticuloendotheliosis virus DNA is integrated at multiple sites in acutely infected avian cells (soon after infection) and at a unique site in chronically infected avian cells (late after infection) (6, 7). However, since the assay method used in these experiments detected only infectious viral DNA molecules, it is possible that noninfectious viral DNA is also present at additional sites in the host cell. We used nucleic acid hybridization techniques to test this possibility and to obtain more information about the pattern of integration of spleen necrosis virus (SNV) in chicken cell DNA.DNA from a large population of SNV-infected chicken cells was digested with restriction endonucleases. DNA fragments that contain viral nucleotide sequences were specifically detected (ii) The majority of this integrated viral DNA is absent from chronically infected cells, a result consistent with the hypothesis that the cell death that occurs after infection of avian cells by reticuloendotheliosis virus is a consequence of these multiple integrations (6, 7). (iii) Viral DNA is also found integrated at multiple sites in chronically infected cells. However, consistent with our previous studies (6, 7), infectious viral DNA is only present at a restricted fraction of these sites.
MATERIALS AND METHODSThe ...