The inherent difficulty
of discovering new and effective antibacterials
and the rapid development of resistance particularly in Gram-negative
bacteria, illustrates the urgent need for new methods that enable
rational drug design. Here we report the development of 3D imaging
cluster Time-of-Flight secondary ion mass spectrometry (ToF-SIMS)
as a label-free approach to chemically map small molecules in aggregated
and single Escherichia coli cells,
with ∼300 nm spatial resolution and high chemical sensitivity.
The feasibility of quantitative analysis was explored, and a nonlinear
relationship between treatment dose and signal for tetracycline and
ampicillin, two clinically used antibacterials, was observed. The
methodology was further validated by the observation of reduction
in tetracycline accumulation in an E. coli strain expressing the tetracycline-specific efflux pump (TetA) compared
to the isogenic control. This study serves as a proof-of-concept for
a new strategy for chemical imaging at the nanoscale and has the potential
to aid discovery of new antibacterials.