In this study, the atmospheric changes for the 9.0-magnitude Tohoku earthquake, which occurred on March 11, 2011, are analyzed. The March 11, 2011 earthquake was preceded by a large foreshock on March 09, 2011 with magnitude M 7.3 and depth 32 km at 02:45:20 UT near the east coast of Honshu, Japan. The earthquake doesn’t limit its effects on the Earth’s lithosphere, hydrosphere and biosphere; it also extends its effects to the atmosphere because of the gas emissions, which produce large-scale seismic waves from the ground and release gases into the atmosphere. In this study, the anomalies of the atmospheric parameters are studied by using one of the atmospheric models from the Naval Research Laboratory Mass Spectrometer Incoherent Scatter Extension 2000 (NRLMSISE-00) model data to analyze the atmospheric anomalies of the Tohoku Earthquake on March 11, 2011. The atmospheric parameters of atomic oxygen (O), hydrogen (H), atomic nitrogen (N), helium (He), argon (Ar), molecular oxygen (O2), molecular nitrogen (N2), total mass density (ρ), neutral temperature (Tn), exospheric temperature (Tex) and anomalous oxygen (AO) are used for analysis during the earthquake occurrence. The epicenter of the Tohoku earthquake, with a geographical location of latitude 38.30° N and longitude 142.37° E, is used for the NRLMSISE-00 model as input parameters to analyze the output of atmospheric parameters. To compare the atmospheric changes caused by the earthquake, 5 days before and after the earthquake are considered. To detect where the atmospheric parameters increased or decreased from the earthquake day, the percentage deviation of the NRLMSISE-00 model is applied. The results indicate that there were atmospheric parameter anomalies that occurred a few days before, following and during the earthquake on March 11, 2011. Except for hydrogen (H), all atmospheric parameters average daily percentage deviation values were positive during the 5 days before and after with respect to the main earthquake shock on March 11, 2011. The NRLMSISE-00 model can capture the atmospheric parameter anomalies of the Tohoku earthquake well.