1997
DOI: 10.1063/1.473867
|View full text |Cite
|
Sign up to set email alerts
|

Solvent-induced interactions between hydrophobic and hydrophilic polyatomic sheets in water and hypothetical nonpolar water

Abstract: "Solvent-induced interactions between hydrophobic and hydrophilic polyatomic sheets in water and hypothetical nonpolar water" (1997 Hydrophobic and hydrophilic interactions are two major intermolecular forces between hydrophobic nonpolar and hydrophilic polar sites of macromolecules or materials surfaces in solvents. To further understand these two interactions at the microscopic level, an idealized polyatomic model is devised, which includes hydrophobic, hydrophilic, and partially hydrophilic polyatomic plana… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1
1

Citation Types

0
4
0

Year Published

1997
1997
2022
2022

Publication Types

Select...
7

Relationship

2
5

Authors

Journals

citations
Cited by 8 publications
(4 citation statements)
references
References 61 publications
0
4
0
Order By: Relevance
“…We determine U solv ͑r͒ as a function of the tip's lateral position ͑x, y͒ and height z by use of the supermolecule approach [16,18] based on the extended reference interaction site model (RISM) integral equation technique [19]. Details of this approach have been given elsewhere [16,18,20]. The supermolecule approach allows one to evaluate the solvent-induced potential of mean force between two molecules without invoking the detailed dynamics of the solvent molecules, thereby considerably reducing the computational effort.…”
mentioning
confidence: 99%
“…We determine U solv ͑r͒ as a function of the tip's lateral position ͑x, y͒ and height z by use of the supermolecule approach [16,18] based on the extended reference interaction site model (RISM) integral equation technique [19]. Details of this approach have been given elsewhere [16,18,20]. The supermolecule approach allows one to evaluate the solvent-induced potential of mean force between two molecules without invoking the detailed dynamics of the solvent molecules, thereby considerably reducing the computational effort.…”
mentioning
confidence: 99%
“…The proposed method can be a useful tool to measure the solvents’ mediation of protein-protein interactions. Proteins interact with other proteins mediated by solvents before they have direct contract, and often the hydrogen-bond networks in solvents play an important role in mediating the interactions between proteins [ 8 , 9 ] At the atomic level, these solvent-mediated protein-protein interactions can be described as the springs (or spring tensors) added between two proteins’ atoms by solvents or the spring networks in solvents located between the two atoms. More specifically, the potential energy surface of solvated proteins can be approximated using the second-order Taylor expansion.…”
Section: Conclusion and Discussionmentioning
confidence: 99%
“…If we look at the interactions between proteins mediated by solvents at the atomic level, the interactions can be described as the cases that solvent particles bridge the gap between proteins’ atoms. The bridging solvent particles can (i) promote the interaction between hydrophilic residues or (ii) defer their direct interactions by forming protein-solvent-protein interactions or hydrogen-bond networks to provide extra time for proteins to rearrange their side chains [ 8 , 9 ]. The bridging effect cannot be captured by SASA and SAV because they can measure only protein-solvent interactions; the bridging effect could be captured by a measurement describing protein-solvent-protein interactions.…”
Section: Introductionmentioning
confidence: 99%
“…12 This approach was originally developed for homogeneous systems. Recently this approach was extended by us to treat inhomogeneous systems 13,5 using the polymer RISM equation.…”
Section: ͑3͒mentioning
confidence: 99%