Multi-rotor aircraft have the advantages of a simple structure, low cost, and flexible operation in the unmanned aerial vehicle (UAV) family, and have developed rapidly in recent years. Radar surveillance and classification of the growing number of multi-rotor aircraft has become a challenging problem due to their low-slow-small (LSS) characteristics. Estimation of the blade number is an important step in distinguishing LSS targets. However, most of the current research on micro-motion parameters estimation has focused on the analysis of rotational frequency, length, and the initial phase of blades with a prior of blade number, affecting its ability to identify LSS targets. In this article, a micro-motion parameters estimation method for multi-rotor targets without a prior is proposed. On the basis of estimating the flashing frequency of the blades, a validation function is constructed through spectral analysis to judge the number of blades, and then the rotational frequency is estimated. The blade length is calculated by estimating the maximum Doppler shift. Moreover, the variational mode decomposition (VMD)-based atomic scaling orthogonal matching pursuit (AS-OMP) method is jointly applied to estimate the blade length when suffering from the low PRF and insufficient SNR conditions. Extensive experiments on the simulated and measured data demonstrate that the proposed method outperforms robust micro-motion parameter estimation capability in low PRF and insufficient SNR conditions compared to the traditional time-frequency analysis methods.