In the sea urchin embryo, the lineage founder cells whose polyclonal progenies will give rise to five different territories are segregated at the sixth division. To investigate the mechanisms by which the fates of embryonic cells are first established, we looked for temporal and spatial expression of homeobox genes in the very early cleavage embryos. We report evidence that PlHboxl2, a paired homeobox-containing gene, is expressed in the embryo from the 4-cell stage. The abundance of the transcripts reaches its maximum when the embryo has been divided into the five polyclonal territoriesnamely at the 64-cell stage-and it abruptly declines at later stages of development. Blastomere dissociation experiments indicate that maximal expression ofPlHboxl2 is dependent on intercellular interactions, thus suggesting that signal transduction mechanisms are responsible for its transcriptional activation in the early cleavage embryo. Spatial expression of PlHboxl2 was determined by whole-mount in situ hybridization. PlHboxl2 transcripts in embryos at the fourth, fifth, and sixth divisions seem to be restricted to the conditionally specified ectodermal lineages. These results suggest a possible role of the PlHboxl2 gene in the early events of cell specification of the presumptive ectodermal territories.In metazoan organisms, commitment of cells to a particular fate or set of fates takes place by three known modes. Syncitial specification is the mechanism used by Drosophila and most insect embryos. Blastomere specification is largely conditional in most invertebrate embryos, and conditional specification is also the major mechanism operating after cellularization in Drosophila. Finally, in most invertebrate embryos the fates of some blastomeres are mostly determined by autonomous specification processes (1, 2). In the sea urchin embryo, specification of cell fates is both cell autonomous and conditional. Only the four micromeres that arise at the vegetal pole at the fourth division appear to be autonomously specified (3). If removed from the embryo and cultured, the micromeres will in fact differentiate in skeletogenic mesenchyme cells, form spicules, and express the cell-lineage marker genes (4-7).Founder cells that are conditionally specified constitute a large fraction of the sea urchin embryo (3). Lithium and phorbol 12-myristate 13-acetate, which are known to affect the inositol phosphate and the protein kinase C second messenger pathways (8-10), respectively, alter cell fate during development. Therefore, signal transduction mechanisms, activated by ligand-receptor interactions, are most probably involved in the specification of adjacent blastomeres. Initial specification of founder cells ends at the sixth cleavage. After segregation of the lineages, the sea urchin embryo at the 64-cell stage can be divided into five polyclonal territories that will differentiate into various structures of the pluteus (11,12).The molecular details of blastomere specification in the sea urchin remain to be elucidated. To clarify ...