The catch of butterfly kingfish Gasterochisma melampus, a large pelagic species in southern temperate waters, is strongly biased (73%) towards females. Whether this is caused by differences in sex-specific spatiotemporal distributions or mortality of sexes is investigated herein. Analysis of sex ratios using a generalized additive model (GAM) for year, month, latitude, longitude, sea surface temperature, and fork length from Japanese longline catch data for areas where immature and adult fish occur revealed the influence of space and time on sex ratios to be small, and that of fork length to be large. Based on observation of the increments in vertebrae of immature fish (N = 179), the fork length at the time of increment formation was back-calculated from distances between increments on the anterior and posterior cones, generating 2–8 measurements per vertebra and 865 data points in total. Growth equations were calculated for each sex, with females growing faster. The age composition of males and females in the catch was similar, meaning that the mortality rate in males is unlikely to be higher than that of females. The data suggest that biased sex ratios in catches are representative of the natural sex ratio in a population for fish more than 60 cm in fork length.