Background: IS (ischemic stroke) remains to be a global public health burden and urgently demands novel strategies. Hypothermia plays a beneficial role in central nervous system diseases. However, the function of hypothermia in IS has not been elucidated. Here we demonstrated the role of hypothermia in IS and explore the mechanism.Methods: IS phenotype was detected by infarct size and infarct volume as well as brain edema in mice. The neuroinflammation was evaluated by activation of microglial cells and expression of inflammatory genes after ischemia/reperfusion (I/R) and oxygen-glucose deprivation/reperfusion (OGD/R). The apoptosis of neuronal cells was assessed by Tunnel staining, expression of Cleaved Caspase-3 and Bax/Bcl-2, cell viability, and LDH release after I/R and OGD/R. Blood-brain-barrier (BBB) permeability was calculated by Evans blue extravasation, the expression of tight junction proteins and MMP-9, cell viability, and LDH release after I/R and OGD/R. The expression of peroxisome-proliferator-activated-receptor gamma (PPARγ) was detected by western blotting after I/R and OGD/R.Results:Hypothermia significantly reduced the infarct size and infarct volume as well as brain edema after ischemia/reperfusion. Consistency, hypothermia induced attenuated neuroinflammation, apoptosis of neuronal cells, and BBB disruption after I/R and OGD/R. Mechanistic studies revealed that hypothermia protected against IS by upregulating the expression of PPARγ in microglial cells, the effect of hypothermia was reversed by GW9662, a PPARγ inhibitor. Conclusions:Our data showed that hypothermia inhibited the activation of microglial cells and microglial cell-mediated neuroinflammation by upregulating the expression of PPARγ in microglial cells. Targeting hypothermia may be a feasible approach for IS treatment.