2015
DOI: 10.1364/boe.6.004447
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SPIM-fluid: open source light-sheet based platform for high-throughput imaging

Abstract: Light sheet fluorescence microscopy has recently emerged as the technique of choice for obtaining high quality 3D images of whole organisms/embryos with low photodamage and fast acquisition rates. Here we present an open source unified implementation based on Arduino and Micromanager, which is capable of operating Light Sheet Microscopes for automatized 3D high-throughput imaging on three-dimensional cell cultures and model organisms like zebrafish, oriented to massive drug screening. Bao, M. McAuliffe, G. Ron… Show more

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Cited by 75 publications
(52 citation statements)
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“…This is a timely technique as biomedical sciences are currently experiencing a strong need to visualize samples in 3D as biological processes occur in volumes. Therefore, despite the fact that 2D cells placed in petri dishes have been widely used to study biological process, LSFM allows the use of agarose or fluorinated ethylene propylene (FEP) tubes [17,42,43] for mounting 3D living samples. Thus, 2D models have been constantly replaced by 3D cell cultures [44][45][46][47], spheroids [48][49][50][51][52], organs and organoids [26,[53][54][55], and model organisms such as Drosophila melanogaster, zebrafish and C. elegans [2,30,33,56].…”
Section: B Lsfm Is An Ad Hoc Technique For 3d Imagingmentioning
confidence: 99%
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“…This is a timely technique as biomedical sciences are currently experiencing a strong need to visualize samples in 3D as biological processes occur in volumes. Therefore, despite the fact that 2D cells placed in petri dishes have been widely used to study biological process, LSFM allows the use of agarose or fluorinated ethylene propylene (FEP) tubes [17,42,43] for mounting 3D living samples. Thus, 2D models have been constantly replaced by 3D cell cultures [44][45][46][47], spheroids [48][49][50][51][52], organs and organoids [26,[53][54][55], and model organisms such as Drosophila melanogaster, zebrafish and C. elegans [2,30,33,56].…”
Section: B Lsfm Is An Ad Hoc Technique For 3d Imagingmentioning
confidence: 99%
“…In addition, such translations may be too slow to track some of the fast dynamic processes over the whole sample volume. This has also triggered an interest in developing new sample-scanning techniques [42].…”
Section: A Mechanical Scanning Of the Samplementioning
confidence: 99%
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“…Still, in our experience, a lot of useful information can be extracted from that single sample. High throughput imaging of multiple embryos has been recently achieved in home built LSFM setups [46][47][48] , although typically at the expense of freedom of sample positioning and rotation.…”
Section: Bounding Boxmentioning
confidence: 99%
“…In addition, imaging through the glass coverslip base of the multi-well plate at 45° to the optical axis introduces astigmatism and higher order aberrations that require subsequent correction and which increase in severity as the NA employed increases. High throughput light sheet fluorescence microscopy has also been demonstrated using fluidic approaches where the sample either flows through the light sheet using an FEP tube at 45° to the light sheet25, or using a millimetre-scale lab-on-a-chip device fabricated using femtosecond micromachining where the sample flows up through the light sheet towards the detection objective26.…”
mentioning
confidence: 99%