A current challenge with adaptive controllers is to define efficient tuning methods of the controller parameters. Unlike linear systems, nonlinear systems may need parameters that are continuously tuned at different operating points to provide stability and desired behaviours. This study aims to develop a solution for tuning proportional–integral–derivative (PID) controller parameters as opposed to changing the operating points of a nonlinear system. Most tuning methods calculate parameters according to the system’s step or frequency response. However, adaptive controllers have self-tuneable parameters or control rules. The proposed algorithm in this paper contains a controller, an estimator, and a reference model, and uses the system model. Unlike the model reference adaptive control method, the proposed controller has tuneable controller parameters estimated by the extended Kalman–Bucy filter. The filter estimates the controller parameters to make the system perform like the auxiliary ideal reference model to ensure minimum-time consumption. Hence, this study aims to develop an algorithm that will automatically calculate controller parameters for each operating point of the controlled chaotic or nonlinear system to minimize settling time at each operating point. The proposed algorithm is implemented in a unified chaotic system in which the estimator and controller of the system run together. Simulation results confirm the performance of the proposed algorithm. In addition, the simulation results provide strong evidence that the proposed algorithm can be an effective tool for controlling nonlinear or chaotic systems.