Statistical analysis of an Australian population for the loci Gc, HLA-DQA1, D1S80 and HUMTH01

Gutowski, Stephen; Budowle, Bruce; Auer, Jeanette; Oorschot, Roland van

doi:10.1016/0379-0738(95)01795-x

Cited by 10 publications

(3 citation statements)

References 15 publications

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“…#-the vWA1*13 and D1S80*17 less frequent alleles have been collapsed for this analysis. [Alonso et al (1993);Bell et al (2000); Boerwinkle et al (1989); Budowle et al (1995); Buresi et al (1995); Chakraborty et al (1991);D'Aloja et al (1992); Deka et al (1992;1994); Destro-Bisol et al (1994;; Evans et al (1993); Falcone et al (1995); Flores et al (2001); Gamero et al (2000;; Gené et al (1993;; Gusmão et al (1997;; Gutowski et al (1995); Halos et al (1999);Hammond et al (1994); Heidrich et al (1995); Hixon et al (1993);Latorra et al (1994); Maviglia et al (2001); …”

Section: Genotype Distributionmentioning

confidence: 99%

Genetic characterization of the population of São Luís, MA, Brazil

et al. 2005

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Five loci (vWA1, F13A1, D12S67, Apo-B and D1S80) were investigated by polyacrylamide gel electrophoresis followed by silver staining in a sample of 177 individuals from the population of São Luís, State of Maranhão, Brazil. A total of 70 different alleles were identified. A statistically significant deviation from the Hardy-Weinberg equilibrium was observed in a single locus (F13A1, p = 0.0075). The average heterozygosity (H) was estimated at 77.7%, the mean number of alleles per locus as 14. The PD (capacity of genotype differentiation at each locus) ranged from 88.9% (vWA1) to 96.7% (F13A1). The combined PE (power of exclusion) of these five loci was 99.8%. In terms of racial admixture (42% European, 39% Indian, and 19% African Black ancestry), São Luís presented an estimate similar to Belém, another trihybrid Amazonian population.

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Section: Genotype Distributionmentioning

confidence: 99%

Genetic characterization of the population of São Luís, MA, Brazil

et al. 2005

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“…D1S80 allele frequencies were studied in a large number of populations worldwide. In this study, 76 different population data (including the data presented in this study) (Al-Nassar et al, 1996;Alkhayat et al, 1996;Balamurugan et al, 2001;Bernal et al, 2000;Cabrero et al, 1995;Çakir et al, 2001;Cerda-Flores et al, 2002;Ciesielka et al, 1996;Das and Seshadri, 2004;Gutowski et al, 1995;Halos et al, 1999;Herrera et al, 2004;Keys et al, 1996;Lorentea et al, 1997;Mastana, 1999;Matamoros et al, 2004;Morales et al, 2001;Ruangjirachuporn et al, 2006;Sachdeva et al, 2004;Sajib et al, 2016;Soares-Vieira et al, 2000;Tenaglia et al, 2004;Trivedi et al, 2002;Vallinoto et al, 2003;Verbenko et al, 2006;Yunis et al, 2001) were fed into POPTREE2 and a phylogenetic tree was constructed following neighbor-joining (NJ) method (Figure 1). Phylogenetic analysis based on the D1S80 alleleic profiles placed the four indigenous populations along with the mainstream Bangladeshis, the north Indian Tamils and the mixed Panjabi Indians in a clade separated from the rest.…”

Section: Resultsmentioning

confidence: 99%

Genetic polymorphism study at D1S80 VNTR in four major tribal populations (Garo, Santal, Khasia and Monipuri) of Bangladesh

Sajib

Hasan

et al. 2016

Asian Australas. J. Biosci. Biotechnol.

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D1S80 is a highly informative variable number of tandem repeat (VNTR) marker located in the telomeric region of chromosome 1 at 1p36-p35. Since its discovery, the D1S80 locus has been used widely in determining the origins and genetic relations among and between various populations worldwide. Here, we studied the allele frequencies and other population genetic parameters at the D1S80 locus among individuals from four major tribal populations in Bangladesh (Santal, Garo, Monipuri and Khasia). The data was then compared with the other populations including the mainstream Bengali population. A total of 31 different alleles were detected with repeat unit numbers ranging between 14 and 50. D1S80 allele with 18 repeats was the most frequent in three populations except the Santals, in which allele with 19 repeats was the most common. Observed heterozygosity was less than the expected in all four populations. Pair-wise observed genetic distances were, in general, more between the tribal populations and the mixed mainstream Bangladeshis compared to the distances between the tribal populations. Comparison of D1S80 allelic frequency distribution among seventy-six different populations placed the tribal populations along with the mainstream mixed Bangladeshis, Tamils and mixed Panjabi Indians in a clade separated from the rest. Asian Australas. J. Biosci. Biotechnol. 2016, 1 (2), 386-393

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“…Population data have been obtained for DQA1 and the PM systems (750). Population data for DQA1, D1S80, and HUMTH01 have been reported (751). Population data on the loci DQA1, PM, and D1S80 have been collected (752)(753)(754)(755)(756)(757)(758)(759).…”

Section: Forensic Biochemistrymentioning

confidence: 99%