“…Clusters were characterized by referencing top gene markers from each cluster with their spatial expression from Allen Brain Atlas ISH data and previous literature (Figure 1—figure supplement 2b, c, mouse.brain-map.org) [32]. From this comparison, we found that PVT neurons (4,067 nuclei; 62.0% of all neurons) expressed markers such as Gck , C1ql3 and Hcn1 , and were thus represented in neuron clusters 0, 2, 3 and 4 (Figure 1—figure supplement 2c, h) [33–35]. Neurons associated with other brain regions surrounding the PVT and represented in our sample include: MD (cluster 1; 1,003 nuclei, 15.3% of neurons), IMD (cluster 5; 500 nuclei, 7.62% of neurons), principal nucleus of the posterior bed nucleus of the stria terminalis (BSTpr; cluster 6; 496 nuclei, 7.57% of neurons), and habenula (Hb; cluster 7; 489 nuclei, 7.46% of neurons) (Figure 1—figure supplement 2d-g, h, Supp.…”