Development of precise protocols for accurate site-specific conjugation of monodisperse inorganic nanoparticles to biological material is one of the challenges in contemporary bionanoscience and nanomedicine. We report here a successful site-specific covalent conjugation of functionalized atomically monodisperse gold clusters with 1.5-nm metal cores to viral surfaces. Water-soluble Au 102 (paramercaptobenzoic acid) 44 clusters, functionalized by maleimide linkers to target cysteines of viral capsid proteins, were synthesized and conjugated to enteroviruses echovirus 1 and coxsackievirus B3. Quantitative analysis of transmission electron microscopy images and the known virus structures showed high affinity and mutual ordering of the bound gold clusters on the viral surface and a clear correlation between the clusters and the targeted cysteine sites close to the viral surface. Infectivity of the viruses was not compromised by loading of several tens of gold clusters per virus. These advances allow for future investigations of the structure−function relations of enteroviruses and enterovirus-related virus-like particles, including their entry mechanisms into cells and uncoating in cellular endosomes.monolayer-protected cluster | biolabeling | virus tracking E nteroviruses belong to a large family of picornaviridae, which are about 30-to 35-nm icosahedral bionanoparticles consisting of a protein capsid without a lipid envelope (1). These nonenveloped viruses contain numerous clinically important human pathogens belonging to coxsackie viruses, echoviruses, and polioviruses. They cause a wide range of acute diseases, from mild rash to viral meningitis, heart muscle failure, and paralysis. Certain enteroviruses, especially from the coxsackie virus group, have also recently been associated with chronic diseases such as diabetes (2). It is thus of great importance to understand the pathogenesis of virus infection in vitro and in vivo, and reliable means of tracking the virus in tissues and cells are crucially needed.Recent applications to study viruses and their distribution in cells and tissues have usually involved the use of fluorescent markers for optical imaging or colloidal gold markers for enhancing image contrast in electron microscopy (3, 4). However, long-term stability of the markers may be compromised by uncontrolled processes such as photobleaching. Furthermore, as the markers link to viruses indirectly via antibodies, the antibody− antigen interactions may not be strong enough to withstand harsh conditions, e.g., under the attack of protein-degrading enzymes in low pH within cellular acidic vesicles or in the gut. Therefore, reliable tracking continues to be a challenge, and more direct and robust tracking strategies are desirable. Here we report a success in using designed covalently bound functionalized linkers that connect atomistically well-defined monodisperse gold clusters with 1.5-nm metal cores to cysteine sites on the surface of enteroviruses echovirus 1 (EV1) and coxsackievirus B3 (CVB3). We obse...