The gut epithelium is an essential interface in insects that transmit parasites. We investigated the role that local innate immunity might have on vector competence, taking Stomoxys calcitrans as a model. S. calcitrans is sympatric with tsetse flies, feeds on many of the same vertebrate hosts, and is thus regularly exposed to the trypanosomes that cause African sleeping sickness and nagana. Despite this, S. calcitrans is not a cyclical vector of these trypanosomes. Trypanosomes develop exclusively in the lumen of digestive organs, and so epithelial immune mechanisms, and in particular antimicrobial peptides (AMPs), may be the prime determinants of the fate of an infection. To investigate why S. calcitrans is not a cyclical vector of trypanosomes, we have looked in its midgut for AMPs with trypanolytic activity. We have identified a new AMP of 42 amino acids, which we named stomoxyn, constitutively expressed and secreted exclusively in the anterior midgut of S. calcitrans. It displays an amphipathic helical structure and exhibits a broad activity spectrum affecting the growth of microorganisms. Interestingly, this AMP exhibits trypanolytic activity to Trypanosoma brucei rhodesiense. We argue that stomoxyn may help to explain why S. calcitrans is not a vector of trypanosomes causing African sleeping sickness and nagana.Epithelial intestinal innate immunity plays a major role in the control of infectious diseases in vertebrates (1, 2). In invertebrates, data are still fragmentary despite gut epithelium being an essential interface for parasites during their development in insect vectors. Understanding vector biology is a key element in the control of many parasitic diseases. In this context, the comparison of the trypanosome vector Glossina with the sympatric but non-vector Stomoxys calcitrans is particularly interesting. The tsetse fly Glossina spp. is the major vector of the range of trypanosomes that cause African sleeping sickness in humans and nagana in livestock. Stable flies, Stomoxys spp., feed on the same vertebrate hosts as tsetse flies and have a very similar digestive physiology and midgut anatomy. Although Stomoxys is constantly exposed to trypanosomes, it kills them in the midgut within 2-4 days of ingestion (3). So Stomoxys is not a cyclical vector of trypanosomes (although it can act as a mechanical vector, "flying pin"). Why Stomoxys is not a cyclical vector of trypanosomes is unknown. Recent studies have shown that the insect immune system plays a determinant role in the fate of trypanosome infections in tsetse flies (4, 5). Consequently, in this report, we address the possibility that the distinction in vectorial capacity between Glossina and Stomoxys may lie in differences in immune mechanisms.Trypanosoma vivax matures entirely in the mouthparts of Glossina. The other trypanosomes causing nagana and human disease are ingested into the fly midgut where they multiply first in the endoperitrophic space and later in the ectoperitrophic space tightly sandwiched between the peritrophic matrix and the ...