Background: Recognition of terminal sialyldisaccharides by influenza A hemagglutinin initiates the infection process of influenza. Results: MD simulations on sialyldisaccharide-hemagglutinin (H1, H3, H5, and H9) complexes reveal the molecular basis of specific recognition.
Conclusion:The order of the binding specificity of Neu5Ac␣(2-3)Gal and Neu5Ac␣(2-6)Gal is H3 Ͼ H5 Ͼ H9 Ͼ H1 and H1 Ͼ H3 Ͼ H5 Ͼ H9, respectively. Significance: The insights from this study will help in designing carbohydrate-based therapeutics against influenza viral infections.