Sequential polymerase chain reaction experiments were performed to amplify a unique sequence representing a guanine nucleotide-binding protein (G-protein)-coupled receptor from rat hypothalamic cDNA. Degenerate oligonucleotides corresponding to conserved amino acids from transmembrane domains III, V, and VI of known receptors[5-HT1A, 5-HT,c, and 5-HT2; 5-HT is serotonin (5-hydroxytryptamine)] were used as primers for the sequential reactions. The resulting product was subcloned and used to screen a rat genomic library to identify a full-length clone (MR77) containing an intronless open reading frame encoding a 366-amino acid seven-transmembrane domain protein. The human homolog was isolated, and its encoded protein had 93% overall amino acid identity with the rat sequence. Within the conserved transmembrane domains, the sequences exhibit approximately 52%, 59%, 65%, and 68% amino acid identity with the known rat 5-HT1A, rat 5-HTIB, rat 5-HT1D, and human 5-HT1E receptors, respectively. MR77 was subcloned into a eukaryotic expression vector system and expressed in CosM6 cells. Studies on broken cell preparations indicate that the expressed receptor exhibits 125I-labeled d-lysergic acid diethylamide (LSD) binding that can be displaced by serotonin but not by other biogenic amines. The specific binding is displaced by the selective 5-HT1D agonist sumatriptan but not by the mixed 5-HTIA/1D agonist 5-carboxyamidotryptamine. 125I-labeled LSD binding was competitively antagonized by the ergot alkaloids methysergide and ergotamine. HeLa cells transfected with the MR77 gene exhibited inhibition of adenylate cyclase in response to serotonin. MR77 is expressed at low levels throughout the brain, with the greatest expression in the cortex, hippocampus, and striatum. MR77 thus represents a 5-HT receptor of the 5-HT1 class, and we propose that, based on the pharmacological characterization, MR77 represents an additional 5-HTlE-like receptor.Serotonin (5- In an attempt to identify other receptors that belong to the family of 5-HT receptors, we used a strategy based upon similarities shared among known members of the family. We designed highly degenerate oligonucleotides corresponding to conserved amino acid sequences in putative transmembrane domains III, V, and VI of the 5-HT1A, 5-HT,c, and 5-HT2 receptors. These oligonucleotides were used in sequential polymerase chain reactions (PCR) with rat hypothalamus cDNA as the template to generate a series ofclones. Here we report that one of these clones and its human homolog ¶ correspond to a 5-HT receptor that is more closely related in sequence to the recently cloned human S31 receptor (5-HT1E) than any previously described 5-HT receptor but clearly is a new member of the 5-HT1 receptor family. Initial pharmacological characterization of this receptor, which is negatively coupled to adenylate cyclase, is similar to but distinct from that described previously for the 5-HTlE receptor (9,12,13), and therefore we propose that MR77 belongs to a new subgroup of 5-HTlE-like r...