Ubc9p is the sole E2-conjugating enzyme for SUMOylation, and its proper function is required for regulating key nuclear events such as transcription, DNA repair, and mitosis. In Tetrahymena thermophila, the genome is separated into a diploid germ line micronucleus (MIC) that divides by mitosis and a polyploid somatic macronucleus (MAC) that divides amitotically. This unusual nuclear organization provides novel opportunities for the study of SUMOylation and Ubc9p function. We identified the UBC9 gene and demonstrated that its complete deletion from both MIC and MAC genomes is lethal. Rescue of the lethal phenotype with a GFP-UBC9 fusion gene driven by a metallothionein promoter generated a cell line with CdCl 2 -dependent expression of green fluorescent protein (GFP)-Ubc9p. Depletion of Ubc9p in vegetative cells resulted in the loss of MICs, but MACs continued to divide. In contrast, expression of catalytically inactive Ubc9p resulted in the accumulation of multiple MICs. Critical roles for Ubc9p were also identified during the sexual life cycle of Tetrahymena. Cell lines that were depleted for Ubc9p did not form mating pairs and therefore could not complete any of the subsequent stages of conjugation, including meiosis and macronuclear development. Mating between cells expressing catalytically inactive Ubc9p resulted in arrest during macronuclear development, consistent with our observation that Ubc9p accumulates in the developing macronucleus. P osttranslational modification by small ubiquitin-related modifier (SUMO) is a major regulator of protein function (reviewed in references 1-5). Unlike ubiquitin, which primarily targets proteins for proteasome-mediated degradation, SUMOylation alters the intracellular localization, protein-protein interactions, or posttranslational modifications of the target (6, 7). The importance of SUMOylation is evident from its roles in the regulation of transcription, mitosis, meiosis, and DNA damage repair (2, 8-10). The SUMO protein is expressed in known eukaryotes, and many proteins required for SUMOylation, including Ubc9p, are highly conserved from protozoa to multicellular species (8). Like ubiquitin, mature SUMO proteins are activated by a heterodimeric E1-activating enzyme (9) in an ATP-dependent reaction. Subsequently, SUMO is transferred from the E1 enzyme active-site Cys to a Cys residue-linked thioester bond in the E2 enzyme known as Ubc9p (10). In the last step, SUMO is attached to the target protein through a Lys-linked isopeptide bond. In vitro, conjugation of SUMO onto substrates can be done directly by Ubc9p; in vivo, E3 ligases increase the specificity and efficiency of the reaction (11, 12).Ubc9p is the only known SUMO E2 enzyme and therefore is a key modulator of SUMOylation. Ubc9p was first described as an essential protein for mitosis in fission yeast (13). Studies of several eukaryotes highlight its importance in multiple aspects of mitosis, including the maintenance of chromosome integrity, proper chromosome segregation, cell cycle progression, kinetochore ...