This study investigated the effects of the physiological state, desiccation-adaptation, and storage of powdered infant formula (PIF) on Salmonella survival and their desiccation stress-related gene expression. PIF was inoculated with S . Typhimurium in the biofilm state on beads and in the planktonic state on nitrocellulose filters and stored at 25°C for up to 270 days. 5-cyano-2,3-ditoyl tetrazolium chloride flow cytometry (CTC-FCM) and Xylose Lysine Deoxycholate (XLD) plate count experiments demonstrated that biofilm-forming Salmonella tends to enter the Viable but Nonculturable (VBNC) state (p< 0.05). The population reduction of all desiccation-adapted S. Typhimurium decreased significantly in both physiological states after exposure to mild heat (60℃) compared with non-adapted control cells (p< 0.05). Salmonella showed heat cross-protection in both physiological states, but only the planktonic state Salmonella induced cross-protection against hydrogen peroxide. As indicated by quantitative reverse transcription polymerase chain reaction (RT-qPCR), rpoS of biofilm Salmonella for all days desiccation adatption examined and plantonic Salmonella on the 7th day of dry storage were significantly upregulated (p< 0.05).The rpoE , grpE , and invA genes in S almonella of both physiological states were significantly downregulated (p< 0.05). Physiological state and storage time might affect expression levels of these genes. In conclusion, prior exposure to these conditions, including low a w , and the physiological state posed an impact on Salmonella in the VBNC state and their gene expression.