Recent advances in the field of prokaryotic N-glycosylation have established a foundation for the pathways and proteins involved in this important posttranslational protein modification process. To continue the study of the Methanococcus voltae N-glycosylation pathway, characteristics of known eukaryotic, bacterial, and archaeal proteins involved in the N-glycosylation process were examined and used to select candidate M. voltae genes for investigation as potential glycosyl transferase and flippase components. The targeted genes were knocked out via linear gene replacement, and the resulting effects on N-glycan assembly were identified through flagellin and surface (S) layer protein glycosylation defects. This study reports the finding that deletion of two putative M. voltae glycosyl transferase genes, designated aglC (for archaeal glycosylation) and aglK, interfered with proper N-glycosylation. This resulted in flagellin and S-layer proteins with significantly reduced apparent molecular masses, loss of flagellar assembly, and absence of glycan attachment. Given previous knowledge of both the N-glycosylation pathway in M. voltae and the general characteristics of N-glycosylation components, it appears that AglC and AglK are involved in the biosynthesis or transfer of diacetylated glucuronic acid within the glycan structure. In addition, a knockout of the putative flippase candidate gene (Mv891) had no effect on N-glycosylation but did result in the production of giant cells with diameters three to four times that of wild-type cells.It has become widely accepted that glycosylation is an important posttranslational protein modification within all three domains of life. Long recognized and studied in eukaryotes, glycosylation pathways in prokaryotes have received more attention in recent years. Several reviews summarizing the current state of knowledge of protein glycosylation in Archaea (2, 11, 42) and flagellar glycosylation in Bacteria and Archaea (25) attest to the progress that has been made in understanding this important process from a prokaryotic perspective. Specifically, significant advances in comprehending the process of N-linked glycosylation, which is the attachment of polysaccharide structures to specific Asn residues within a conserved Asn-Xaa-Ser/ Thr motif (where Xaa is any amino acid except Pro) have occurred. Of note is the N-glycosylation system in Campylobacter jejuni, where the gene products from the pgl locus assemble a branched heptasaccharide on a membrane-bound lipid carrier and then translocate the glycan across the cytoplasmic membrane to facilitate transfer to the appropriate Asn residue of the target protein (24, 34).The study of archaeal glycosylation in recent years has begun to yield an understanding of how these organisms modify proteins. The first requirement for assembling a glycan of any linkage type is a pool of nucleotide-activated monosaccharide precursors. Several enzymes have been identified from Methanococcus maripaludis that are required for UDP-acetamido sugar synthesis...