The conditional mRNA transport mutant of Saccharomyces cerevisiae, acc1-7-1 (mtr7-1), displays a unique alteration of the nuclear envelope. Unlike nucleoporin mutants and other RNA transport mutants, the intermembrane space expands, protuberances extend from the inner membrane into the intermembrane space, and vesicles accumulate in the intermembrane space. MTR7 is the same gene as ACC1, encoding acetyl coenzyme A (CoA) carboxylase (Acc1p), the rate-limiting enzyme of de novo fatty acid synthesis. Genetic and biochemical analyses of fatty acid synthesis mutants and acc1-7-1 indicate that the continued synthesis of malonyl-CoA, the enzymatic product of acetyl-CoA carboxylase, is required for an essential pathway which is independent from de novo synthesis of fatty acids. We provide evidence that synthesis of very-long-chain fatty acids (C 26 atoms) is inhibited in acc1-7-1, suggesting that very-long-chain fatty acid synthesis is required to maintain a functional nuclear envelope.The regulation of synthesis and transport of phospholipids has been characterized at length, but the signals which determine the phospholipid and fatty acid composition of particular membranes and membrane-specific lipid requirements are not well understood (7,62,81,83). The present investigation, which is the outgrowth of analysis of a yeast (Saccharomyces cerevisiae) mutant which accumulates poly(A) ϩ RNA in the nucleus at the restrictive temperature (41), documents a critical relationship between fatty acid chain length and the integrity of the nuclear membrane and nuclear pore complex (NPC).The biosynthesis of very-long-chain fatty acids requires four enzyme systems: acetyl coenzyme A (CoA) carboxylase, fatty acid synthase, fatty acid desaturase, and the fatty acyl chain elongation system (Fig. 1). The rate-limiting step of the de novo synthesis of fatty acids is under control of the first of these, acetyl-CoA carboxylase (Acc1p; EC 6.4.1.2). This biotinylated enzyme catalyzes the ATP-dependent carboxylation of acetyl-CoA to yield malonyl-CoA, which serves as the twocarbon-unit donor for the subsequent synthesis of long-chain fatty acids by the fatty acid synthase complex. The chain length of newly synthesized fatty acids appears to depend on the concentration of malonyl-CoA rather than on the activity of the fatty acid synthase complex (35, 43a, 82). Acc1p thus regulates both the overall rate of de novo synthesis and chainlength distribution of long-chain fatty acids. It is perhaps for this reason that its activity is subject to complex regulation (48). Yeast Acc1p/Fas3p has a subunit molecular mass of 250 kDa, is active as a tetramer, and is subject to short-term regulation by phosphorylation (2, 60, 90). Its transcription is positively regulated by Ino2p and Ino4p and negatively regulated by Opi1p; i.e., it is under the general control of phospholipid synthesis (14, 31).Many yeast long-chain fatty acid auxotrophs have been isolated (72). Sixty-one are alleles of acc1 (55, 67), while others bear mutations in fatty acid synthase (19,...